Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1150 ATGTTTGTGGCTCGATTCCTCGCCGTCGTTTTTCTCTCCTCTCTCGCTTCCGACGCCGCTCGGCTGCCGGACGACGAAGTTGAGGCGTTGAAGGAGATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCACGGCCGATCCATGCGGCGGTTTGAGTAGCGGTTGGATATCGAATTCTTCATTCGATTCTTATTATGCTAATAATGTCACCTGCAATTGTAGGTTCCAGAAAAATACACTCTGTCACGTCATTACCATTAGTCTAAAGAAGCAGAGCCTTCAAGGTACTCTGCCACCGCAAATAGTGAGATTGCCTTTCTTGCGGGAACTTGATCTCTCCCGCAACTATCTCAGCGGCCCAATTCCTAAAGAATGGGGTTCCACCAAGCTTGCCAACATTTCCCTTCTCGGAAACCGATTGACTGGTCCAATCCCAAAAGAGATTGGAAACATCAGCACTCTTGTAGAGTTGCTCTTGGAAATGAATCATTTATCTGGAAGTGTACCTCCAGAACTTGGAAATCTGTCCAGATTATCAAGATTACTTCTTACCACAAACAACTTTTCTGGAGAGCTCCCACCTTCTCTGGCAAGGTTAACCTCATTGAAAGACTTTCGAATTAGTGATAATCACTTCACAGGACCAATACCTAAATTTATGCAGAGTTGGAGGGATCTTGGAAAACTAGCTATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTTTGAAATTGGACTTTTGACACAATTATATGATGTGAGAATCAGTGACTTGAATGGAGCTTCATCACCCTTCCCGCCCATTAATACTTTGACAAGATTGAGAATCCTGATACTGAGGAATTGCAATATAACTGGAGTGTTGCCCGACAATCTTAACGGATTGACAGCATTGCAGACCTTAGATTTCAGCTTCAATAAAATTACTGGACCAATACCTGCCAGCTTTGAAGCTTTGATAAAAGTGGATAGCATATATTTAACTGGAAACTTACTAAATGGACCAGTGCCTCCATGGATGCTACAGGATGGAGAAAACATTGATCTTTCTTATAACAAATTTACTGAGAGTAATATTCAGGACACTGGTTGTGAATCACGAAGTTTAAATTTGTTTGCGAGCTCAGAACAGGACAATAGTTTAAGTGGAAAAGTTTCATGTTTGGCGGACGCTTGTGAAAAAACTTGGTACTCTGTCCATATCAACTGTGGTGGGAAGGAAGAATTAATTAATAGAACAACCAAATTTGTTGGAGACACAAACACTGGAAAATCATCATTGTTTTTTCAAGGTGGAGCGAATTGGGGATTTAGCAACACTGGTAATTTTATGGACTTAGATCGCTCAACAGACGACTTTATTGCACTAAATTCATCTCCTCTCTCAATGCCAAATCCTGAATTGTACATGAGGGCGCGCATTTCTCCAATCTCTCTTACTTATTATGCATTTTGCATGGGTAATGGATACTACACTGTAAGCCTCCATTTTGCCGAGATAATGTTTACTGATGACAAAACATACAGAAGCCTTGGCAGACGCATTTTTGATGTCTACATTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGTGGTGTTGGCAAACCTGTTGTAAAGAAATTCAATGTTTTTGTGGCAAATGGTACTATAGAGATCCGCCTATTTTGGTCTGGGAAGGGGACAGTTGCAATCCCTGTGAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCCGAATTTGTGCCACCATCAGAAGGTGGAAATGTCATAGCTGTCGGTGCAATGGTTGGAATTGTGGCAGCTGTGGTTTTTGTTTCAATCTCGGTTCTTGGAGCCTTGTGGTGGAGAGGCCGCCTAAGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGACCTAGAATTAGGAACAGCTTCATTTTCATTAAGACAAATTAGAGCTGCGACTAACAATTTTGATGATGCCAATAAGATTGGAGAAGGTGGTTTTGGTTCTGTTTACAAGGGTGTTCTTGCCGATGGCACTGTAATTGCAGTGAAACAACTTTCTTCAAAGTCAAAGCAAGGAAATCGCGAATTTGTGAATGAGATAGGCATGGTATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTTTGGATGTTGTATCGAAGGAGATCAACTTTTGCTAGTATATGAGTATCTAGAAAATAATAGCCTTGCTCGTGCCTTATTTGGACCCGAAGAATATCAATTGAAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGTATAGCTAAAGGTTTAGCGTATCTTCATGATGAGTCAAGACTAAAAATTGTTCACCGAGACATCAAAGCTACCAATGTTCTACTTGATAAAAATCTCAACTCTAAGATTTCCGACTTCGGTTTGGCCAAGTTAGATGAAGAACAAAAAACACACATCAGCACACGAGTCGCTGGAACCTTCGGGTATATGGCACCAGAATATGCCATGCGAGGCCACTTAACTGACAAAGCAGATGTTTATAGTTTTGGCATCGTGGCATTAGAAATAGTCGGTGGTCGAAGCAACACAAGTTTTCAAACTAAGGATGATTGCTTTTACCTTCTTGACTATGCTAATGATTTAAGAGAGAGAGACAGTTTACTAGAGCTTGTCGATCCACGATTAGGCTCTGAATTCGACAAGACAGAAGTAATGGCGATGATCAATGTTGCTCTCCAGTGCACTAATGTCATTGCTGCGGATAGACCATCCATGTCAGCAGTAGTGAGCATGTTGGAAGGGAAGGTTGCTGTGAAGGAGATGGTTTCAGATCCTAATATCTCAAAACAAGATGTGAATGCAATGTGGTGTCAAATTTATCGCCAAAAAGGGAAAACGAATGAGAGCCCGACGCAAAGTGTATCGGCGGATGGACCAAAGACTGGTTCTTCAAGTACTGACAGTGATATACATCCCATAGTCATGGATTCTAAATACTTGGAGAGTAGGAAGTAG 3012 41.77 MFVARFLAVVFLSSLASDAARLPDDEVEALKEIGKTLGKTDWNFTADPCGGLSSGWISNSSFDSYYANNVTCNCRFQKNTLCHVITISLKKQSLQGTLPPQIVRLPFLRELDLSRNYLSGPIPKEWGSTKLANISLLGNRLTGPIPKEIGNISTLVELLLEMNHLSGSVPPELGNLSRLSRLLLTTNNFSGELPPSLARLTSLKDFRISDNHFTGPIPKFMQSWRDLGKLAIQASGLSGPIPFEIGLLTQLYDVRISDLNGASSPFPPINTLTRLRILILRNCNITGVLPDNLNGLTALQTLDFSFNKITGPIPASFEALIKVDSIYLTGNLLNGPVPPWMLQDGENIDLSYNKFTESNIQDTGCESRSLNLFASSEQDNSLSGKVSCLADACEKTWYSVHINCGGKEELINRTTKFVGDTNTGKSSLFFQGGANWGFSNTGNFMDLDRSTDDFIALNSSPLSMPNPELYMRARISPISLTYYAFCMGNGYYTVSLHFAEIMFTDDKTYRSLGRRIFDVYIQGKLELKDFNIADAAGGVGKPVVKKFNVFVANGTIEIRLFWSGKGTVAIPVRGVYGPLISAISVDPEFVPPSEGGNVIAVGAMVGIVAAVVFVSISVLGALWWRGRLRKKSTLEQELKDLELGTASFSLRQIRAATNNFDDANKIGEGGFGSVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMVSALQHPHLVKLFGCCIEGDQLLLVYEYLENNSLARALFGPEEYQLKLDWPTRHKICVGIAKGLAYLHDESRLKIVHRDIKATNVLLDKNLNSKISDFGLAKLDEEQKTHISTRVAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVGGRSNTSFQTKDDCFYLLDYANDLRERDSLLELVDPRLGSEFDKTEVMAMINVALQCTNVIAADRPSMSAVVSMLEGKVAVKEMVSDPNISKQDVNAMWCQIYRQKGKTNESPTQSVSADGPKTGSSSTDSDIHPIVMDSKYLESRK 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9184255 9195414 - Lag0037788.1 Lac2g1150 598414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1150 1003 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515(InterPro)
Lac2g1150 1003 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 944 IPR051824 -
Lac2g1150 1003 Pfam Leucine Rich Repeat 108 127 IPR001611 GO:0005515(InterPro)
Lac2g1150 1003 MobiDBLite consensus disorder prediction 962 1003 - -
Lac2g1150 1003 Gene3D Transferase(Phosphotransferase) domain 1 736 953 - -
Lac2g1150 1003 Gene3D Ribonuclease Inhibitor 227 400 IPR032675 -
Lac2g1150 1003 ProSiteProfiles Protein kinase domain profile. 660 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1150 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1150 1003 Pfam Protein tyrosine and serine/threonine kinase 664 931 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1150 1003 Pfam Malectin domain 399 583 IPR021720 -
Lac2g1150 1003 MobiDBLite consensus disorder prediction 962 990 - -
Lac2g1150 1003 SUPERFAMILY Protein kinase-like (PK-like) 644 946 IPR011009 -
Lac2g1150 1003 CDD STKc_IRAK 666 933 - -
Lac2g1150 1003 Gene3D - 401 587 - -
Lac2g1150 1003 SMART serkin_6 660 931 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1150 1003 Gene3D Phosphorylase Kinase; domain 1 623 735 - -
Lac2g1150 1003 FunFam Putative LRR receptor-like serine/threonine-protein kinase 736 943 - -
Lac2g1150 1003 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 629 735 - -
Lac2g1150 1003 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 397 588 - -
Lac2g1150 1003 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 23 260 - -
Lac2g1150 1003 Gene3D Ribonuclease Inhibitor 35 153 IPR032675 -
Lac2g1150 1003 Gene3D Ribonuclease Inhibitor 154 226 IPR032675 -
Lac2g1150 1003 SUPERFAMILY L domain-like 78 356 - -
Lac2g1150 1003 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1150 Lac-Chr2:9184255 Lac2g1158 Lac-Chr2:9264824 0.00E+00 dispersed
Lac2g1149 Lac-Chr2:9169844 Lac2g1150 Lac-Chr2:9184255 6.40E-284 tandem
Lac2g1150 Lac-Chr2:9184255 Lac2g1151 Lac-Chr2:9204393 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86008 PF07714 PK_Tyr_Ser-Thr 2.30E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1150 - - - 0.0