Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1159 ATGCTAACATATCAAGTGAATGTGACAGTGAGAGCCCTTCAAGCAATATCTGCAGAGCTAAGGAACTTAAACTGGAACGTGCACCAAAATTCTTGCATTAATGGCGATGGATTTTCCAATGGACCTATCGTTAATACAGATATTATCAGAGAGGTGAACTGCACTTGCACGACTGCAGTTTGCACAGTCACTAGCATTCGGCTAAAGGGTCTCAATCTAACTGGAACTCTGCCAGCAGCATTTGCAAATCTGACTCGGCTGCAAGTGATAGATCTTACTCGCAATTTAATATCCGGATCAATCCCTAGAGAGTTTGCTCGGATTCCTCTTGTTGATTTGTCCATGTTGGGAAATCGGCTCAGTGGTCAGATTCCTCCAGAGATTGGTGACATTGCTACACTTGAGCATCTGGTCTTGGAAGACAATCTCCTTGGAGGAAACCTTCCCGAAAGCCTCGGGAGACTGAGCCGCTTGCAAAGATTACTTCTTAGTGCAAATAATTTCACGGGGACGATTCCGGCCTCGTATGGAAACTTGAGGAACTTGACTGATTTTCGGATAGATGGAAATGATATATCTGGAAAACTTCCTGAGTTTATTGGCAATTGGACCAAACTTGACAGACTGGACATTCAAGGTACTTCGATGGAGAACCCGATTCCTCGTGCCATATCCGAGTTGAAAAACTTAACTGAATTGAGGATTACTGATTTGAAGGGACCAGCAACAAGTTTTCCCAATTTGACTCTATTGACATCTTTAGAAGAATTGGTCCTAAGAAATTGCTTAATCGAGGATCGTATTCCTGAATATATTGGACAGTTTAGTAGATTAAAAACTTTAGATCTAAGCTTCAACGAATTGAATGGTCCTATTCCAGACTCATTTCGGAATCTAGAAAGAGTTACTCAGTTCTTGTTTTTGACCAACAACTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTCAAAGGAGCATAGATTTATCTTACAACAATTTTACAGGGTCCCCTGTTTCAAGTTGTCAACAATCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAATGAACGAAACTGTTGCTTGGTGCTTGAGGAAGGATCTCCCTTGCCCTATAGGAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGACAAAGGATGGAGCATGATGGTAATCAATATGAAGAGGATGTCACTCTAGGTGGCAAGTCCAATTTCCTTTCTTTCTCAGATAGATGGGCTTATAGCAGTACTGGTGTTTTCCTGGGAAACGAGGATGCTGATTACAGAGCAACAAGCAGCAATGCGTCTATTCCGAGCATCTATCGAACCGCTCGGCTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGCTTAAGAAGAGGAAGCTACAATGTGAAGCTTCACTTCGCTGAAATAATGTATACCGCTGACCAAACATTTAGCAGCTTGGGAGAGCGCATATTTGATATCTCAATTCAAGGAAATTTGGTTAGAAAAGATTTTAACATAATGGAGGAAGCTGGTGGTGTTGGCAACACCTTTACTTTGGAAGAGCCTAATATTTTGGTCAATGAAAGTACTCTTGAGATTCACTTGTATTGGGCTGGTAAAGGAACTACTGCCATTCCAAACAGAGGGGTTTATGGACCTCTGATATCTGGGATCACTGTGACACCAAACTTTGATGTGGAGACTGGAGGGCTGTCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTTGTTTTGTATTTGTTGTGTTGGTATTGGCTGTTCTTAGGTGGAAAGGTTACTTGGGTGGAAAGGACACTGAAGACAGTGAATTGAAGGCCCTAGATTTACAGACAGGTTATTTCAGTTTGAGACAAATTAAAGCAGCCACCAACAACTTCGACTCGACAAATAAGATCGGTGAAGGAGGTTTTGGTCCAGTGTTCAAGGGAGTATTATCAGACGGTACTCCAATTGCAGTAAAGCAACTATCATCCAAATCAAGACAAGGGAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATCGAAGGAAACCAATTGTTGCTTATATATGAGTTTCTAGAGAACAATAGTCTTGCCCGTGCACTTTTTGGTTCTGAGGAGCACCGACTACATTTGGATTGGTCGATAAGAATGAAGATATGTCTGGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCACAGAGATATAAAAGCTACCAATGTGCTACTTGATAAAAATTTGAATGCCAAGATTTCTGACTTTGGGTTGGCCAGGCTTGATGAGGAGGAGAACACCCATATCAGCACAAGAATTGCTGGCACAATAGGTTACATGGCTCCGGAGTATGCGATGAGAGGTTACTTAACTGATAAAGCCGATGTTTATAGCTTCGGAGTTGTGGCCTTAGAGATTGTGAGTGGAAAAAGTAACACAAATTACAGACCAAAGGAGGAATTTGTCTATCTTCTTGACTGGGCTTACGTTCTACAAGAGCAAGGAAACCTTCTCGAACTTGTCGATCCGAGTCTCGACTCACATTACTCAAAAGAAGAGGTCATGAGGATGATTCATATCTCTCTCTTATGCACAAATCCGTCTCCAACTCTCAGGCCATCCATGTCTTCTGTGGTTAGTATGCTAGAAGGAAAAATCGCGGTCCAAGCACCGATCATCAAGCGCGGTGCAGTCGATCAAGATGCAAGGTTCAAAGCCTTTGAAAGGCTGTCACAAGATAGCATAACAAGCATTTCAACATCATCACAAGGCATTCCAATGCAGAAAAGCATGTTAATGGATGGGCCATGGATTGACTCCTCTACTTCTACACAAAACAAGGACGAGACACGAGATTTTTCTTCAACAAGAAACCTCCTTTAG 2949 41.91 MLTYQVNVTVRALQAISAELRNLNWNVHQNSCINGDGFSNGPIVNTDIIREVNCTCTTAVCTVTSIRLKGLNLTGTLPAAFANLTRLQVIDLTRNLISGSIPREFARIPLVDLSMLGNRLSGQIPPEIGDIATLEHLVLEDNLLGGNLPESLGRLSRLQRLLLSANNFTGTIPASYGNLRNLTDFRIDGNDISGKLPEFIGNWTKLDRLDIQGTSMENPIPRAISELKNLTELRITDLKGPATSFPNLTLLTSLEELVLRNCLIEDRIPEYIGQFSRLKTLDLSFNELNGPIPDSFRNLERVTQFLFLTNNSLSGQVPSWILNSQRSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTMNETVAWCLRKDLPCPIGTRFHSLFINCGGQRMEHDGNQYEEDVTLGGKSNFLSFSDRWAYSSTGVFLGNEDADYRATSSNASIPSIYRTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMYTADQTFSSLGERIFDISIQGNLVRKDFNIMEEAGGVGNTFTLEEPNILVNESTLEIHLYWAGKGTTAIPNRGVYGPLISGITVTPNFDVETGGLSAGAIAGIVVGCFVFVVLVLAVLRWKGYLGGKDTEDSELKALDLQTGYFSLRQIKAATNNFDSTNKIGEGGFGPVFKGVLSDGTPIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEFLENNSLARALFGSEEHRLHLDWSIRMKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKNLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLDSHYSKEEVMRMIHISLLCTNPSPTLRPSMSSVVSMLEGKIAVQAPIIKRGAVDQDARFKAFERLSQDSITSISTSSQGIPMQKSMLMDGPWIDSSTSTQNKDETRDFSSTRNLL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9315876 9322451 + Lag0037797.1 Lac2g1159 598423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1159 982 SMART serkin_6 633 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1159 982 Gene3D Ribonuclease Inhibitor 238 365 IPR032675 -
Lac2g1159 982 Pfam Malectin domain 381 559 IPR021720 -
Lac2g1159 982 ProSiteProfiles Protein kinase domain profile. 633 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1159 982 Gene3D Ribonuclease Inhibitor 48 237 IPR032675 -
Lac2g1159 982 Pfam Leucine Rich Repeat 277 299 IPR001611 GO:0005515(InterPro)
Lac2g1159 982 Pfam Leucine Rich Repeat 86 106 IPR001611 GO:0005515(InterPro)
Lac2g1159 982 Pfam Leucine Rich Repeat 157 179 IPR001611 GO:0005515(InterPro)
Lac2g1159 982 MobiDBLite consensus disorder prediction 957 982 - -
Lac2g1159 982 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 378 564 - -
Lac2g1159 982 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 246 338 - -
Lac2g1159 982 CDD STKc_IRAK 639 906 - -
Lac2g1159 982 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 929 IPR051824 -
Lac2g1159 982 Gene3D Transferase(Phosphotransferase) domain 1 709 917 - -
Lac2g1159 982 MobiDBLite consensus disorder prediction 953 982 - -
Lac2g1159 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 172 239 - -
Lac2g1159 982 Gene3D - 379 564 - -
Lac2g1159 982 Pfam Protein tyrosine and serine/threonine kinase 636 903 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1159 982 SUPERFAMILY Protein kinase-like (PK-like) 617 910 IPR011009 -
Lac2g1159 982 SUPERFAMILY L domain-like 54 336 - -
Lac2g1159 982 Gene3D Phosphorylase Kinase; domain 1 602 708 - -
Lac2g1159 982 FunFam Putative LRR receptor-like serine/threonine-protein kinase 709 916 - -
Lac2g1159 982 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 602 708 - -
Lac2g1159 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0056 Lac-Chr12:684116 Lac2g1159 Lac-Chr2:9315876 9.10E-121 dispersed
Lac2g1159 Lac-Chr2:9315876 Lac5g2414 Lac-Chr5:42790269 0.00E+00 dispersed
Lac2g1161 Lac-Chr2:9345585 Lac2g1159 Lac-Chr2:9315876 6.10E-65 dispersed
Lac9g1531 Lac-Chr9:34041418 Lac2g1159 Lac-Chr2:9315876 7.20E-68 dispersed
Lac2g1158 Lac-Chr2:9264824 Lac2g1159 Lac-Chr2:9315876 3.70E-212 tandem
Lac2g1159 Lac-Chr2:9315876 Lac2g1160 Lac-Chr2:9329307 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86012 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1159 - - - 0.0