Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1160 ATGGATTTGAAGAGTGTTCATGTTCATGTTCGTGTTCGTGTTCTTGTCTGTGGATTGCTGCTTTTCAACTGCTTCTTGGAATTTGGATCGGATGCTCAAACTCTGCCTCAACAAGAAGTGAGAGCCCTTGAAGCAATATCTGCAGAGCTTAAGAATTTAAATTGGAAGGCCCACCAGAATTCTTGCATTAATGGCGACGGCTTTTTCAATAGAATTAGCAGGAATGCCAATATGAGAGAGGTGAATTGCACTTGTAATACAAGTATTTGCAGCGTCACCAGCATTCGGTTAAGGGGTCAAAATCTAGTTGGAGTTCTACCCGCAGCATTTGCAAATCTAACTCAACTGCATGAGTTAGATCTCTCTCGCAATTTAATAAATGGATCAATCCCAAAGGAGTTTGCTCGCATTCCTCTTGTTATTTTTTCCATGGTGGAAAACCAACTCAGTGGTCAAATTCCTCCAGAACTTGGTGATATTGCTTCACTTGAGGAACTGGTGTTGGAAAGCAATCAGCTTGGAGGAAATCTTCCTGATAGCCTCGGCAAACTTAGCCACCTGCAAAGACTGCTTCTTTCTTCGAATAATTTCACAGGGTCCATTCCAGAATCTTTTGGAAACTTGAGGAACTTGACTGAATTTCGGATAGATGGAACTAACATATCAGGAAAGATACCTGAATATATTGGCAACTGGACCAAACTTGGTAAACTGTATGCTCAAGGAACTTCCATGGAGAACCCCATTCCTCGTGCAATATCTGAGTTGAAAAACTTAACCGAACTGATAATGAGTGATTTGAAGGGACCGCGGATAAATTTCCCCAATTTGACTCAATTGACATCTCTGCAAACATTGGTCTTAAGAAATTGCTTAATCGAGGGTCCTATCCCTGAATATATTGGACAGTTTAGTGAGTTAATAACGTTAGATCTAAGCTTCAACAGATTAAGTGGCCCAATTCCAGAGACAGTTTGGAATCTGTTGGTCAACAAAACTGAGTTCATGTTTTTGACTAACAACTCCTTGACCGGCCAAGTACCGGGTTGGATTATGAACGGTGGCAACAGCCAAAGGAACATAGATGTATCTTACAATAATTTTACAAGGTTGCCCACTTTCAGTTGTACACAGTCTAATAATGTAAACTTGGTTTCCAGTTCAGCTGCAAATAATAAAAATGATGCTTGGTGCCTGAAGAAGGATCTCCCTTGCCCTACAGAAGCTCGATTTGATTCGTTGTTCATTAATTGTGGAGGACGAGGTATGGAGATTAATGGTAATAAATACGAAGGGGATGATACTCAGAGTGGGAAAGCCAGTTTCTATTCTTCATCAGAAAGATGGGGTTATAGTAGTACTGGTGTTTTCCTGAAAAGTCATCGCGTTCCTTACATAGTATCAACTACCAATGGCTCTGCTTCAGGCGTCTATGCCACTGCTCGACTCTCACTTCTTTCTCTCAACTATTATGGATTTTGCTTCAGAAATGGAAGTTACAATGTCAAGCTTCACTTTGCTGAAATTGCTTTTACTGCTGACCAAACTCGTACTAGGAAACGTATATTTGATGTCTCAATTCAAGGAAACTTGGTTTGGAAAGATTTTAACATAGTGGAGGAAGCTGGAGGGGTTGGTAAGAGCTTTATTTTGGAAGAGCCTAATGTTTTAGTGAATGGAAGCACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGGACAAAGATAGGGGTGTATGGACCTCTAATATCTGCAATCACTGTGACACCAAACTTTAATGTGGAAACTAATGTGGAAAGTAGAGGGCTATCGGCTGGAGCTATAGCTGGCATTGTTGTTGGTATTTTCGTGTTTGTTGTTTTAGTATTGGTTGTTCGTCGATGGAAGGGTTACTTGGGTGGAAAGGAAACCGAAACCGATGAACTTCGGGATCTGAAATTACAGACAGGTTATTTCAGTTTAAGACAAATTAAAGCGGCGACTAACAACTTTGACTTGGCAAATAAGATAGGCGAAGGAGGTTTTGGTCCTGTCTACAAGGGAGTACTCTCCGATGGCACTTCAATTGCTGTAAAACAGCTATCTTCTAAATCAAGGCAAGGGAACCGTGAATTCATCACTGAAATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATCGAAGGAAACCAATTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCCCGTGCCCTATTTAGTCCCGAGAAGCACTCACTACATTTGGACTGGCCAATAAGAATGAATATATGCTTGGGAATAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAGCTACCAACGTGCTACTCGATGGAAACTTGAATGCCAAGATCTCAGACTTTGGGTTGGCTAAGCTTGATGACGAGGAGAACACCCATATCATCACAAGAATTGCAGGCACAATCGGTTACATGGCTCCTGAATATGCAGTGAAGGGTTATTTGACTGATAAAGCTGATGTTTATAGCTTTGGAGTTGTGGCGTTAGAAATTGTTAGTGGGAAAAGTAACACAAACTATATGCCAAACGACGAGTTTGATTATCTTCCTGATTGGGCTTGTGTTCTACACGAGGAAGGGAACCTACTAGAACTCGTTGATCCGAGTCTTGGCTTACATTACTCAAAAGAGGAGGTCATGAAGATGCTTCACATAGCTCTCTCGTGCACAAATCTGTCTCCAAGTCTCAGACCATCCATGTCTTCTGTGGTTAGCATGCTTGAAGGTAAAATCGAAGTCGATGTATCGAACATCAAGCGCAACCCGACGGATCGAGATGCAAGGCTCAAAGCCTTTGAAAAGTTGTCACAAGATAGCCTAACAAGTATTTCAACATCGTCACAAGGCATTCCAATGCAGAGAGGCATGTTAATGGACGGGTGGATTGATTCATCATCTACTTCTAGCCAAAACAAGAATAAGACTCGAGTGGATTTTTCAACTAGCAGTCTCCTTAGAGATTGA 3048 41.01 MDLKSVHVHVRVRVLVCGLLLFNCFLEFGSDAQTLPQQEVRALEAISAELKNLNWKAHQNSCINGDGFFNRISRNANMREVNCTCNTSICSVTSIRLRGQNLVGVLPAAFANLTQLHELDLSRNLINGSIPKEFARIPLVIFSMVENQLSGQIPPELGDIASLEELVLESNQLGGNLPDSLGKLSHLQRLLLSSNNFTGSIPESFGNLRNLTEFRIDGTNISGKIPEYIGNWTKLGKLYAQGTSMENPIPRAISELKNLTELIMSDLKGPRINFPNLTQLTSLQTLVLRNCLIEGPIPEYIGQFSELITLDLSFNRLSGPIPETVWNLLVNKTEFMFLTNNSLTGQVPGWIMNGGNSQRNIDVSYNNFTRLPTFSCTQSNNVNLVSSSAANNKNDAWCLKKDLPCPTEARFDSLFINCGGRGMEINGNKYEGDDTQSGKASFYSSSERWGYSSTGVFLKSHRVPYIVSTTNGSASGVYATARLSLLSLNYYGFCFRNGSYNVKLHFAEIAFTADQTRTRKRIFDVSIQGNLVWKDFNIVEEAGGVGKSFILEEPNVLVNGSTLEIHLYWAGKGTKIGVYGPLISAITVTPNFNVETNVESRGLSAGAIAGIVVGIFVFVVLVLVVRRWKGYLGGKETETDELRDLKLQTGYFSLRQIKAATNNFDLANKIGEGGFGPVYKGVLSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFSPEKHSLHLDWPIRMNICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDGNLNAKISDFGLAKLDDEENTHIITRIAGTIGYMAPEYAVKGYLTDKADVYSFGVVALEIVSGKSNTNYMPNDEFDYLPDWACVLHEEGNLLELVDPSLGLHYSKEEVMKMLHIALSCTNLSPSLRPSMSSVVSMLEGKIEVDVSNIKRNPTDRDARLKAFEKLSQDSLTSISTSSQGIPMQRGMLMDGWIDSSSTSSQNKNKTRVDFSTSSLLRD 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9329307 9338977 + Lag0037798.1 Lac2g1160 598424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1160 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 411 591 - -
Lac2g1160 1015 Gene3D Transferase(Phosphotransferase) domain 1 740 958 - -
Lac2g1160 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 269 - -
Lac2g1160 1015 Pfam Malectin domain 414 586 IPR021720 -
Lac2g1160 1015 Gene3D Phosphorylase Kinase; domain 1 632 739 - -
Lac2g1160 1015 Gene3D - 413 591 - -
Lac2g1160 1015 ProSiteProfiles Protein kinase domain profile. 664 939 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1160 1015 Pfam Leucine Rich Repeat 307 328 IPR001611 GO:0005515(InterPro)
Lac2g1160 1015 Pfam Leucine Rich Repeat 282 303 IPR001611 GO:0005515(InterPro)
Lac2g1160 1015 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 87 177 - -
Lac2g1160 1015 SUPERFAMILY Protein kinase-like (PK-like) 648 943 IPR011009 -
Lac2g1160 1015 Pfam Leucine rich repeat 162 221 IPR001611 GO:0005515(InterPro)
Lac2g1160 1015 Pfam Leucine rich repeat 91 139 IPR001611 GO:0005515(InterPro)
Lac2g1160 1015 SUPERFAMILY L domain-like 80 369 - -
Lac2g1160 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1160 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Lac2g1160 1015 MobiDBLite consensus disorder prediction 989 1015 - -
Lac2g1160 1015 Pfam Protein tyrosine and serine/threonine kinase 666 935 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1160 1015 Gene3D Ribonuclease Inhibitor 36 268 IPR032675 -
Lac2g1160 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 957 IPR051824 -
Lac2g1160 1015 SMART serkin_6 664 935 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1160 1015 CDD STKc_IRAK 670 937 - -
Lac2g1160 1015 Gene3D Ribonuclease Inhibitor 269 387 IPR032675 -
Lac2g1160 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1160 Lac-Chr2:9329307 Lac2g1171 Lac-Chr2:9419998 0.00E+00 dispersed
Lac2g1167 Lac-Chr2:9393009 Lac2g1160 Lac-Chr2:9329307 8.80E-71 dispersed
Lac2g1160 Lac-Chr2:9329307 Lac2g1163 Lac-Chr2:9363567 5.20E-190 proximal
Lac2g1160 Lac-Chr2:9329307 Lac2g1169 Lac-Chr2:9411233 1.10E-32 proximal
Lac2g1159 Lac-Chr2:9315876 Lac2g1160 Lac-Chr2:9329307 0.00E+00 tandem
Lac2g1160 Lac-Chr2:9329307 Lac2g1161 Lac-Chr2:9345585 8.00E-57 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86013 PF07714 PK_Tyr_Ser-Thr 1.20E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1160 - - - 0.0