Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1163 ATGGGCCGAGGCCGAGCAGGGGATCGGGCCGAAAACCCGAACCCTTCGGTCTTGGCCCGTCCCATTTGCCGGTTTTGCCTCCTTGGTCCATCTTTCAGCCCGATTTCTCCCCGGTTGTCCTCGTCAGCTCCTTGTGTATCGGGGTGGTCCAAAATTGCCTATAACAGATGGGGTTACAGCATTACTGGTGTTTTCTTGGGAAGTAAAGGCCTTCCTTACACTAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATTATGTTTACTGCTGACCAAACCTTTAGCAGTTTGGGAAAGCGCATATTTGATATCTCAATTCAAGGAAACTTGGTTAAAAAAGATTTGAACATAATGAAGGAAGCTGGAGGTGTTGGTAAGAGCTTTATTTTGGAAGAGCCTAATATTCAAGTAACTGGCAGCACTCTCGAGATCCACTTATATTGGGCTGGTAAAGGAACAAATGGTATTCCTGTTACAGGGGTTCATGGACCTCTAATATCTGCGATTACAGTCACACCCAACTTACAGGCAGGAGGGCTATCGACGGGAGCTATTACTGGCATTATTGTCGTTGCTAGTTTTGTGTTTGTCGTTTTAGTATTGGTTGTTCTTCGGAGGAAGGGTTACTTAGGCATGAAGGAAATTAAAGACAAAGAACTTCAGGATCTAAAATTACAAACGGGATATTTTAGTTTAAGACAAATCAAAGAAGCAACCAACAACTTTGATTCGGCATATAAGATTGGCGAGGGAGGTTTTGGCCCTGTCTACAAGGGAGTACTGCCCGATGGAACTTCAATTGCTGTAAAGCAACTATCCTCTAAATCAAGACAAGGGAATCGTGAGTTCGTTACCGAAATCGGCATGATATCTGCATTACATCATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATCGAAGAAAACCAATTATTACTTATATATGAGTTTCTAGAGAACAATAGTCTTGCCCGTGCACTTTTTAGCCCCGAGAGACATACGCTACATTTGGATTGGCCAATAAGGATGAAGATATGCGTAGGAGTAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAGCTACTAACATTCTACTTGATGGAAACTTGAATGCCAAGATCTCAGACTTCGGGTTGGCTAAACTTTATGAAGAGGAGAACACTCATATTAGCACAAGAGTTGCAGGCACCATAGATTACATGGCTCCTGAGTATGCAATGAGGGGTTATCTGACTGATAAAGCTGACGTTTATAGTTTTGGAGTTGTGGCCTTAGAGATGGTTAGTGGAAAAAGTAATACGACCTACAGACTAAATGCTAATGTTCTACAAGAGGAAGGGAACCTACTCGAGCTTGTTGATCCGAGTCTTGGCTCACATTACTCACAAGAAGAGGTCATGAGGATGCTTCATATAGCTCTGTTATGCACGAACTTGTCTCCACCTCTTAGACCATCCATGTCTTCTCTGTAG 1506 42.43 MGRGRAGDRAENPNPSVLARPICRFCLLGPSFSPISPRLSSSAPCVSGWSKIAYNRWGYSITGVFLGSKGLPYTSGSYNVKLHFAEIMFTADQTFSSLGKRIFDISIQGNLVKKDLNIMKEAGGVGKSFILEEPNIQVTGSTLEIHLYWAGKGTNGIPVTGVHGPLISAITVTPNLQAGGLSTGAITGIIVVASFVFVVLVLVVLRRKGYLGMKEIKDKELQDLKLQTGYFSLRQIKEATNNFDSAYKIGEGGFGPVYKGVLPDGTSIAVKQLSSKSRQGNREFVTEIGMISALHHPNLVKLYGCCIEENQLLLIYEFLENNSLARALFSPERHTLHLDWPIRMKICVGVAKGLAYLHEESRLKIVHRDIKATNILLDGNLNAKISDFGLAKLYEEENTHISTRVAGTIDYMAPEYAMRGYLTDKADVYSFGVVALEMVSGKSNTTYRLNANVLQEEGNLLELVDPSLGSHYSQEEVMRMLHIALLCTNLSPPLRPSMSSL 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9363567 9366979 + Lag0037801.1 Lac2g1163 598427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1163 501 Pfam Malectin domain 73 170 IPR021720 -
Lac2g1163 501 FunFam Putative LRR receptor-like serine/threonine-protein kinase 319 501 - -
Lac2g1163 501 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 212 318 - -
Lac2g1163 501 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 67 500 IPR051824 -
Lac2g1163 501 Gene3D Phosphorylase Kinase; domain 1 209 318 - -
Lac2g1163 501 Gene3D - 55 175 - -
Lac2g1163 501 Pfam Protein tyrosine and serine/threonine kinase 247 500 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1163 501 CDD STKc_IRAK 249 501 - -
Lac2g1163 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1163 501 ProSiteProfiles Protein kinase domain profile. 243 501 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1163 501 Gene3D Transferase(Phosphotransferase) domain 1 319 501 - -
Lac2g1163 501 SUPERFAMILY Protein kinase-like (PK-like) 227 500 IPR011009 -
Lac2g1163 501 SMART serkin_6 243 494 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1163 Lac-Chr2:9363567 Lac2g1168 Lac-Chr2:9403285 1.80E-199 dispersed
Lac2g1160 Lac-Chr2:9329307 Lac2g1163 Lac-Chr2:9363567 5.20E-190 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86014 PF07714 PK_Tyr_Ser-Thr 6.60E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1163 - - - 0.0