Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1168 ATGGGCTTCTGGGATGCTTCTAATGTGGGCTTGAATGTTACTTGGTGCCTGAGAGGGGATATCCCTTGCAATAGAGAAGATCGATTTCGTTCGTTGTTCATTAACTGTGGAGGAAACCAGATGGAGTTTGATGGTAATGTATATGAAAGGGATGCGAATAACGAAGGCAAATCCTATTTCTCTTCTATGACTGAGAAATGGGGTTACAGCAGTACCGGTGTTTTCATGTTTAATGATACCAATCGACACTTAACAAGAAGCAGCAATGGCTCTGCTGCTTCAAGCATATATGCCACAGCTCGACTCGCGCCCGTTTCGCTTAAGTACTATGGATTTTGCTTACAAAGTGGAAGTTACAATGTGAAGCTTCACTTTGCTGAGATTATGTTTACTGCTGACCAAACCTTTGGCAGTCTGGGAAAGCGCATATTTGATATCTCAATTCAAAGAAACTTGGTTGAAAAAGATTTTAACATAGTGGAGAGAGCTGGAGGTGTTGGTAAGAACTATACTCTGGAAGTGCCTAATGTGATAGTAACTGGCAGCACTCTTGAGATCCATTTATACTGGGCTGGTAAAGGGACAAATGACATTCCATTCAAAGGGGTGCATGGGCCTCTAATATCTGCAATCACAGTTACATCAAACTTTGGTGATGATCAGGCAACTCTATCAGCTGGAGCTATTGCTGGCATTGTTGTTGGTAGTATTGCGTTCGTTGTTTTAGTATTGGTTGTTCTTCGAAGGAAGGGTTACTTAGGCGGGAAAGAAACTGAAGACAAAGAACTTCGGGACCTAAAGTTACAGACAGGTTATTTCAGTTTAAGACAAATCAAAGCAGCAACCAAAAATTTTGACTCAGCATATAAAATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAATACTGTCGGATGGCACTTCAATCGCTGTAAAGCAGCTATCCTCTAAATCAAGACAAGGGAACCGTGAATTCATCACCGAAATTGGAATGATATCTGCATTACAACATCCGAATCTTGTTAAGCTTTATGGTTGTTGTATTGAAGGAAACCAATTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCTCGAGCACTATTTGGTCCTGAAGAGCACTCACTACATTTAGATTGGTCGGTGAGAATGAAGATATGCTTGGGGGTAGCAAGGGGATTGGCTTACCTTCACGAAGAATCTAGATTAAAAATTGTTCATAGAGATATAAAAGCTACCAATGTGTTGCTTGATAAAAGCCTTAATGCCAAGATCTCAGACTTTGGATTGGCTAAGCTTGACGAAGAGGATAACACCCATATCAGCACAAGAATTGCGGGCACGAGAGGTTACATGGCTCCTGAATACGCAACGAGGGGTTATTTGACTGATAAAGCCGATGTTTATAGCTTTGGAGTTGTGGCCTTAGAAATTGTCAGTGGAAAAAGCAACACAAATTACAAACCAAAAGCAGAGTTCGTTTATCTTCTAGACTTGGCTATTGTGCTACAAGAAGAAGGAAAGCTACTCGAACTTGTTGACCCGAGTCTTGGCTCAGAATACTCAAAAGAAGAAGCCATGAGGATGCTTCATATCGCTCTGTTATGCACGAACCTGTCTCCAACTCTCAGACCATCCATGTCTTCCGTGGTTAGCATGCTTGAAGGTAAAAGTCCAATTGAAGTGTCGAACATCAGACAAAATGTAGCTGATCGAGATGCAAGGCTGAAAGCCCTTGAAATGCTGTCACAAGACAGCCTGACAAGCATTTCAACATCATCGCAAGGCATACAAATGCAGAGAAGCATGTTAATTGATGGGCCATGGATTGACTCATCGTCTACTTCTTCCCAAAACAAGGACGAGACTCCAACTACAAGTCTCCTTCGAGATTGA 1902 41.69 MGFWDASNVGLNVTWCLRGDIPCNREDRFRSLFINCGGNQMEFDGNVYERDANNEGKSYFSSMTEKWGYSSTGVFMFNDTNRHLTRSSNGSAASSIYATARLAPVSLKYYGFCLQSGSYNVKLHFAEIMFTADQTFGSLGKRIFDISIQRNLVEKDFNIVERAGGVGKNYTLEVPNVIVTGSTLEIHLYWAGKGTNDIPFKGVHGPLISAITVTSNFGDDQATLSAGAIAGIVVGSIAFVVLVLVVLRRKGYLGGKETEDKELRDLKLQTGYFSLRQIKAATKNFDSAYKIGEGGFGPVYKGILSDGTSIAVKQLSSKSRQGNREFITEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNNLARALFGPEEHSLHLDWSVRMKICLGVARGLAYLHEESRLKIVHRDIKATNVLLDKSLNAKISDFGLAKLDEEDNTHISTRIAGTRGYMAPEYATRGYLTDKADVYSFGVVALEIVSGKSNTNYKPKAEFVYLLDLAIVLQEEGKLLELVDPSLGSEYSKEEAMRMLHIALLCTNLSPTLRPSMSSVVSMLEGKSPIEVSNIRQNVADRDARLKALEMLSQDSLTSISTSSQGIQMQRSMLIDGPWIDSSSTSSQNKDETPTTSLLRD 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9403285 9406555 + Lag0037806.1 Lac2g1168 598432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1168 633 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Lac2g1168 633 Gene3D - 31 217 - -
Lac2g1168 633 MobiDBLite consensus disorder prediction 610 633 - -
Lac2g1168 633 Pfam Protein tyrosine and serine/threonine kinase 289 555 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1168 633 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 254 360 - -
Lac2g1168 633 Pfam Malectin domain 32 211 IPR021720 -
Lac2g1168 633 FunFam Putative LRR receptor-like serine/threonine-protein kinase 361 568 - -
Lac2g1168 633 CDD STKc_IRAK 291 558 - -
Lac2g1168 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1168 633 Gene3D Transferase(Phosphotransferase) domain 1 361 579 - -
Lac2g1168 633 SMART serkin_6 285 556 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1168 633 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 29 216 - -
Lac2g1168 633 ProSiteProfiles Protein kinase domain profile. 285 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1168 633 SUPERFAMILY Protein kinase-like (PK-like) 269 561 IPR011009 -
Lac2g1168 633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 84 571 IPR051824 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1163 Lac-Chr2:9363567 Lac2g1168 Lac-Chr2:9403285 1.80E-199 dispersed
Lac2g1168 Lac-Chr2:9403285 Lac5g2414 Lac-Chr5:42790269 2.10E-242 dispersed
Lac2g1168 Lac-Chr2:9403285 Lac2g1171 Lac-Chr2:9419998 1.50E-272 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86015 PF07714 PK_Tyr_Ser-Thr 2.60E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1168 - - - 0.0