Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1171 ATGCAATACACAGATAAACATTGGGACATTGATACTTTAGAAGCTTTAGCAATCCTGGAAGGGATTAAAAGCATTGCTAGTATCTGCGCTCAGAATCGGATGGGGCTGGAAGTTGAGTCAGACTCGAAGGCCGTTATCGATGCTATCAACGGCGACTCAGAAATCATCTCGGAGCTGAGAAACGTCATCGAGTTGATTGTATCAGCAGCGGCAGGCCCGACTCCGATGGTCTTTAGGCACTGCAGACGGGAAGCCAACGCACTCGCCCATTGCGTTGCCCAGCGTGCCTCGTCTCCTTCTGCTTTTGAAGAAGATGGTTTTTTTGTTCTCAGTCGAGGGGCCCCCCTTCGCAGGAAATGGGATGTACTTTTTGGAACCCTGATCTTCCAGGGTGGATTTTCCCTCTCATTGATGAGGGTTGTTGTTTTCGGTTTTGGAGTTCTACCCGCAGCATTTGCAAATCTAACTCAACTACGAGTATTAGATCTCACTTACAATGTTATATCTGGATCAATCCCTAGGGAATTTGCTCGCATTCCTCTGGTTAATTTTTCCATGTTGGGAAACCAACTTAGTGGTCAGATTCCTCCAGAAATTGGTAATATTGCTTCACTTGAGGAACTGGTCTTGGAAGACAATCGGATTGGAGGAAATCTTCCTGAAAGTCTCGGAAAACTAAGTCGGTTGAATAGACTACTTCTTTCTTCAAATAATATCACAGGGTCGATTCCAGAATCTTTTCGAAACTTGAGGAACTTGACTGATTTTCGGATGGATGGAAATAACATATCAGGAAAGATACCTGATTATATTGGCAACTGGACCAACCTTAGTTGTCTTTTTATTCAAGGCACTTCTATGGAGAACCCCATTCCTCGTGCTATATCCGAATTGAAAAACTTAGTCTACCTGGTAATAAGTGATTTGAAGGGACCGTGGATAAGTTTCCCCAATTTGACTCAAATGACATCTTTACAAACATTGGTCTTAAGAAATTGCTTAATCGAGGGTCCTATCCCTGATTATATTGGACAGTCTAATGAATTGAGAACTTTAGATCTAAGCTTCAACCGATTGAGCGGTCGAATTCCAGACACATTTCAAAATCTGTTGGTAAAAAAAACTGAGTTCTTGTTTCTGACTAACAACTCCTTAAGCGGCCAAGTACCGGATTGGATTATGAACGCTGGCAACAGCGGAATAAGGAACATAGATTTATCTTACAACAATTTTACAGGGTTGCCTGCTTTCAGTTGCACACAGTCTAATAATGTGAACTTGATTTCCAGTTCAAGTGTGAAGAATGAAAATGCTGATTGGTGCTTGATGAAGGATCTCCCTTGCCCTACCAATGATCGATTTCATTCGTTGTTCATTAATTGTGGAGGACGAAGTATGGAGTTTAATGATACTAAATATGAAGGGGATGATAGTGAGGGTGGCAAATCTAGTTTCTTTTCTTCAGCAGAAAGATGGGGTTACAGTAGTACTGGTGTTTTCTTGAGAAATGACAGCCTTCCTTACAAAGTAGCAACTACCAATGGCTCTGCTAATTCAGACATATATGACACAGCTCGACTCTCACCTCTTTCTCTCAAGTACTATGGATTTTGCTTGCAAAATGGAAGTTACAATGTCAAGCTTCACTTTGCTGAAATTATGTTTACTGCTGACCAAACCTATAAGAGCCTCGGAAAGCGCATATTTGATATCTCCGTTCAAGGAAACTTGGTTTGGAAAGATTTTAACATAGTGGAGGAAGCTGGAGGTGTTGGTAAGAGCTTTATTTTGGAAGAGTCTAATGTTTTAGTGAATGGAAGCACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGAACAAATGCCATTCCACAGATAGGGGTGTATGGACCTCTAATATCCGCCATCACTGTGACACCAAACTTTGATGTGGGAACTAATGTGGAAAGTAGAGGGTTATCGGCTGGAGCTATAGCTGCCATTGTTGTTGGTATTTTCGTGTTCGTTGGTTTAGTATTGGTTGTTCTTCGATGGAAGGGTTACTTAGGTGGAAAGAAAACTGAAGACGATGAACTTCGAGATCTAAAACTACAGACAGGTTATTTCAGTTTAAAACAAATCAAAGCAGCCACCAACAACTTTGACTCGGCACATAAGATAGGCGAGGGAGGTTTTGGTCCTGTATACAAGAAAATATTTGGCAGTACACTGTCAGATGGCACTTTGATTGCCGTCAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAATTCATCACAGAAATTGGCATGATATCTGCTGTACAACATCCAAATCTTGTTAGACTTTATGGTTGTTGTATTGAAGGAAACCAGTTATTGCTTATTTATGAGTATCTAGAGAACAATAATCTTGCACGTGCACTTTTTAGCCCCGAGGAGCATTCACTACATCTGGATTGGCCAATAAGAATGAAGATATGCTTGGGAATTGCAAAGGGTTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCACAGAGATATAAAAACTACTAACGTTCTACTTGATGGAAGCTTGAATGCCAAGATCTCAGACTTCGGATTGGCTAAGCTTGATGAAGAGGATAAGACCCATATCAGCACAAGAATTGCAGGCACCATTGAGTATGCGATGAGAGGTTATTTGACCGATAAAGCTGATGTTTATAGTTTTGGAATTGTGGCCTTAGAGATTGTAAGTGGGAAAAGTAATACGAGTTACAGGCCGAAAGAGGAGTTTGTTTATCTTCTTGACTGGGCTTATGTTCTACAAGAGGAAGGGAACCTACTGGAACTTGTTGACTCGAGGCTTGGGCCACATTACTCAAAAGAGGAGGCCATGAGGATGCTTCATGTAGCTCTGTTATGCACGAACCTGTCTCCGACTCTCAGACCGTCCATGTCTTCAGTGGTTAGTATGGTTGAAGGTAAAATTGCAGTGGAAGTATCAAACATCAAGCGCAACACAGCTGATCGAGATGCAAGGTTTAAAGCCTTTGAGAAGACATCAAAAGACAGCCTTACAAGCATTTCAACCTCGTCGCAAGGTGTTCAGATGCAGAGAAGCATGATAGCCGGTGGGCCATGGATCGACTCTTCTACTTCTTCCACTCAAAACAGAGACGAGAGTCGAGACTATTCTTCAACCACAAGTCTCCTTGCAGATTGA 3198 41.65 MQYTDKHWDIDTLEALAILEGIKSIASICAQNRMGLEVESDSKAVIDAINGDSEIISELRNVIELIVSAAAGPTPMVFRHCRREANALAHCVAQRASSPSAFEEDGFFVLSRGAPLRRKWDVLFGTLIFQGGFSLSLMRVVVFGFGVLPAAFANLTQLRVLDLTYNVISGSIPREFARIPLVNFSMLGNQLSGQIPPEIGNIASLEELVLEDNRIGGNLPESLGKLSRLNRLLLSSNNITGSIPESFRNLRNLTDFRMDGNNISGKIPDYIGNWTNLSCLFIQGTSMENPIPRAISELKNLVYLVISDLKGPWISFPNLTQMTSLQTLVLRNCLIEGPIPDYIGQSNELRTLDLSFNRLSGRIPDTFQNLLVKKTEFLFLTNNSLSGQVPDWIMNAGNSGIRNIDLSYNNFTGLPAFSCTQSNNVNLISSSSVKNENADWCLMKDLPCPTNDRFHSLFINCGGRSMEFNDTKYEGDDSEGGKSSFFSSAERWGYSSTGVFLRNDSLPYKVATTNGSANSDIYDTARLSPLSLKYYGFCLQNGSYNVKLHFAEIMFTADQTYKSLGKRIFDISVQGNLVWKDFNIVEEAGGVGKSFILEESNVLVNGSTLEIHLYWAGKGTNAIPQIGVYGPLISAITVTPNFDVGTNVESRGLSAGAIAAIVVGIFVFVGLVLVVLRWKGYLGGKKTEDDELRDLKLQTGYFSLKQIKAATNNFDSAHKIGEGGFGPVYKKIFGSTLSDGTLIAVKQLSSKSRQGNREFITEIGMISAVQHPNLVRLYGCCIEGNQLLLIYEYLENNNLARALFSPEEHSLHLDWPIRMKICLGIAKGLAYLHEESRLKIVHRDIKTTNVLLDGSLNAKISDFGLAKLDEEDKTHISTRIAGTIEYAMRGYLTDKADVYSFGIVALEIVSGKSNTSYRPKEEFVYLLDWAYVLQEEGNLLELVDSRLGPHYSKEEAMRMLHVALLCTNLSPTLRPSMSSVVSMVEGKIAVEVSNIKRNTADRDARFKAFEKTSKDSLTSISTSSQGVQMQRSMIAGGPWIDSSTSSTQNRDESRDYSSTTSLLAD 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9419998 9434774 + Lag0037809.1 Lac2g1171 598435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1171 1065 SUPERFAMILY Ribonuclease H-like 7 98 IPR012337 -
Lac2g1171 1065 SUPERFAMILY Protein kinase-like (PK-like) 698 984 IPR011009 -
Lac2g1171 1065 Pfam Leucine rich repeat 204 263 IPR001611 GO:0005515(InterPro)
Lac2g1171 1065 CDD STKc_IRAK 720 986 - -
Lac2g1171 1065 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 683 793 - -
Lac2g1171 1065 Pfam Reverse transcriptase-like 12 96 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lac2g1171 1065 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 454 641 - -
Lac2g1171 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1171 1065 SUPERFAMILY L domain-like 145 413 - -
Lac2g1171 1065 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 220 311 - -
Lac2g1171 1065 Gene3D - 455 641 - -
Lac2g1171 1065 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 317 414 - -
Lac2g1171 1065 ProSiteProfiles Protein kinase domain profile. 714 988 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1171 1065 Gene3D Transferase(Phosphotransferase) domain 1 794 1011 - -
Lac2g1171 1065 Pfam Malectin domain 457 636 IPR021720 -
Lac2g1171 1065 Gene3D Ribonuclease Inhibitor 142 285 IPR032675 -
Lac2g1171 1065 Pfam Protein tyrosine and serine/threonine kinase 717 982 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1171 1065 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 146 1010 IPR051824 -
Lac2g1171 1065 CDD RNase_H_like 14 93 IPR044730 -
Lac2g1171 1065 FunFam Putative LRR receptor-like serine/threonine-protein kinase 794 996 - -
Lac2g1171 1065 Pfam Leucine Rich Repeat 324 344 IPR001611 GO:0005515(InterPro)
Lac2g1171 1065 Pfam Leucine Rich Repeat 157 177 IPR001611 GO:0005515(InterPro)
Lac2g1171 1065 Pfam Leucine Rich Repeat 349 370 IPR001611 GO:0005515(InterPro)
Lac2g1171 1065 Gene3D Ribonuclease Inhibitor 289 447 IPR032675 -
Lac2g1171 1065 Gene3D - 4 101 IPR036397 GO:0003676(InterPro)
Lac2g1171 1065 MobiDBLite consensus disorder prediction 1036 1065 - -
Lac2g1171 1065 SMART serkin_6 714 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1171 1065 Gene3D Phosphorylase Kinase; domain 1 683 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1160 Lac-Chr2:9329307 Lac2g1171 Lac-Chr2:9419998 0.00E+00 dispersed
Lac2g1171 Lac-Chr2:9419998 Lac5g2414 Lac-Chr5:42790269 8.60E-260 dispersed
Lac6g1270 Lac-Chr6:12561489 Lac2g1171 Lac-Chr2:9419998 4.70E-06 dispersed
Lac2g1167 Lac-Chr2:9393009 Lac2g1171 Lac-Chr2:9419998 2.20E-45 proximal
Lac2g1168 Lac-Chr2:9403285 Lac2g1171 Lac-Chr2:9419998 1.50E-272 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86016 PF07714 PK_Tyr_Ser-Thr 1.10E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1171 - - - 0.0