Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1204 ATGAAATATCATGGGGAATGCCTGAAGCAAAAAGACATTGATCCTGGAGTGGAATCTCATATTTGGTTTTGTAGCGGGAGTTGTCAGAAGATTTACACAGGTCTTCAATCACGACTTGGACTGATTAATCAGTTTGCAGACGGGTTTTCATGGATGCTTCTTAGATGTATTCATAATGACCAGAAAATTCTATCCACCCCACGCTTAGCTATGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTCACTATAATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTAGTGTACAGCTGGAAGTCAAGTTTTCCTCGTCTGGACTTTCATGGCTTTTACACTGTGATACTAGAGAAAAATGATGTGCTGCTATGCGTAGCATCTATCAGGGTACATGGATCAGAACTTGCTGAGATGCCCCTTATTGCAACTTGTAGTAAATATCGTCGCCAGGGAATGTGTAGGCGACTGCTGAATGCTATAGAAGAGATGCTAATGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACTGAGGGTTTTGGCTTCATACCTGTGGAAGATGTTGAAAAACAAAGTTTTCACAGGTTCAATTTGATGGTGTTTCCTGGAACAGTACTACTAAAGAAAGCCTTGTATGTAAGTGGTCAAAATACAGAGAAAACAGAAGGAGTACAACCTGACGCTGATTCAAAACAACAATGTGATGTTTACTCCAATCCCGATGAAGCATGTCCTAGAGTGGAAATGAAATGTTTAAAATATCAAGAATTGCAAGAACACAATGTTGAAAAGACAAGGAAGGATGACGAGGGAAATCCAGCTCCAATCAATTCATCCACATTGCAGTTGGTTGAATCAAATGGAGTGGACACTTCTTCAGAACAGAAACCTGATGGAAACTGTTGCACTGACAAAGTTGGTGCCACAGCTGAAACCCACTCTGAGGAGGGGAAAGAGTTGTTAGAAGTAGTAGAAGTTGGCGCAGAACGCGACGTAGTTCACGCAGCCGCTATGACGAGATTTGTAGAACCCGTTGTTCTAACTTAG 1104 41.49 MKYHGECLKQKDIDPGVESHIWFCSGSCQKIYTGLQSRLGLINQFADGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKNDVLLCVASIRVHGSELAEMPLIATCSKYRRQGMCRRLLNAIEEMLMSFKVKKLVIAAIPSLVETWTEGFGFIPVEDVEKQSFHRFNLMVFPGTVLLKKALYVSGQNTEKTEGVQPDADSKQQCDVYSNPDEACPRVEMKCLKYQELQEHNVEKTRKDDEGNPAPINSSTLQLVESNGVDTSSEQKPDGNCCTDKVGATAETHSEEGKELLEVVEVGAERDVVHAAAMTRFVEPVVLT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9746387 9756707 - Lag0037842.1 Lac2g1204 598468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1204 367 PANTHER PHD FINGER PROTEIN 12 2 322 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Lac2g1204 367 CDD NAT_SF 125 185 - -
Lac2g1204 367 Gene3D - 105 217 - -
Lac2g1204 367 MobiDBLite consensus disorder prediction 291 318 - -
Lac2g1204 367 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 120 207 IPR016181 -
Lac2g1204 367 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 67 231 IPR000182 GO:0016747(InterPro)
Lac2g1204 367 MobiDBLite consensus disorder prediction 282 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1204 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2278 Lac-Chr12:39906929 Lac2g1204 Lac-Chr2:9746387 9.30E-49 dispersed
Lac2g1204 Lac-Chr2:9746387 Lac9g2383 Lac-Chr9:42996651 3.10E-44 dispersed
Lac2g1204 Lac-Chr2:9746387 Lac4g2273 Lac-Chr4:42382029 2.10E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1204 . 2 233 PHD Transcription Factor Family AT3G14980 64.7 7.7e-84 310.1
Lac10g3089 . 18 847 PHD Transcription Factor Family AT3G53680 53.7 7.0e-249 857.8
Lac13g0962 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.5e-37 153.7
Lac9g2501 . 509 635 PHD Transcription Factor Family AT3G53680 53.9 1.1e-36 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40