Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1245 ATGTCTGACGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGGTTTAGTTCTTTGGAGCTTATTGGAAGAGGTTCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTTTTGTCACAATGTCGATCGCCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAGCTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTGCAGTCTGGGCCACCGCTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAATTCTGAAGGATACAATGAGAAGGCAGACATCTGGTCTCTTGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCGCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCCAAAGAGCTTCTGAAGCATCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGATGAAGATGCAGAAACACCAACTAATGGTTCTAGAGCTATGGGTGAAACATCGGATACTGTGAAAGTATCAAGAAATGTAAGGGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCAAAGAATGCTGGATGGGACTTTAGCATTGGGGGGCCAAATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCCGACTGCATCTGGAAATGCACCTCGTGACATAGCAGAAAATGCTAGAAATTCGTACAATATGGGGGATGCTAGTGAAGATGAAGAGTTATCTGTAAGTGGTTCAGGAACCATTGTGATCCGGTCTCCCAGGGGGTCTCACGGATCTACTCAATTTCAAAATGAAAGCAGTCCGTCTGAAAGTGCACAAGCATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCGGACTCTCCTCGGACTCCAAGATCCAGATTGGGAACTCAAGAAAGGACTTCAAGTTTGTCTCCTGAAGATAGTGCATTAAACCTTGCGGAGGCAAAGGCTGCAATGCAAGCAGCATTGAAGAAAGCTAATGTAAGGGAAAGACCGGCTCTCAATAAACTCAATGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCGAGGCATTCTCGTGAATTCTTTGATGCACCAAGAGCATTGCCAAAACCATCTCCATCAATTGATGAAGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCTTTATCGATTTTGTTTATGTCAACCTTGAAAGAGGTAGTTGCGGATGATTCGGAAGGATCACCTGCTCGTTCTGTAATTAATGCACTTATAAATATGGAACACCGAAAACCTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTTCAGAAATTGGCCAGTTCCAATGATTCTTCACTGAAAGATTTACAAGACTTGGCAACTCGCATATTCTCCAAGGCAAAGACAGTTCCCGAAGATACTCAAAATGTCGCAGATTCTGATAGCAGCAAAAAGCAACCAAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCACGGGATCTCAGTCCAGCTTAA 2091 42.52 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEDEDAETPTNGSRAMGETSDTVKVSRNVREETVRASNQSKTPKNAGWDFSIGGPNSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWPTASGNAPRDIAENARNSYNMGDASEDEELSVSGSGTIVIRSPRGSHGSTQFQNESSPSESAQAYFEDTSFSGTVVMRGQRDDSDSPRTPRSRLGTQERTSSLSPEDSALNLAEAKAAMQAALKKANVRERPALNKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALPKPSPSIDEEESAKIALSSAPLSILFMSTLKEVVADDSEGSPARSVINALINMEHRKPGSCEVLVTKLLQKLASSNDSSLKDLQDLATRIFSKAKTVPEDTQNVADSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10155119 10175197 - Lag0037883.1 Lac2g1245 598509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1245 696 Coils Coil 41 68 - -
Lac2g1245 696 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 320 352 - -
Lac2g1245 696 CDD STKc_MST3_like 14 287 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 510 529 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 419 444 - -
Lac2g1245 696 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1245 696 MobiDBLite consensus disorder prediction 648 672 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 456 487 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 278 391 - -
Lac2g1245 696 SUPERFAMILY Protein kinase-like (PK-like) 13 319 IPR011009 -
Lac2g1245 696 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1245 696 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Lac2g1245 696 SMART serkin_6 15 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1245 696 MobiDBLite consensus disorder prediction 506 557 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 471 487 - -
Lac2g1245 696 FunFam serine/threonine-protein kinase dst1 isoform X1 12 302 - -
Lac2g1245 696 MobiDBLite consensus disorder prediction 278 297 - -
Lac2g1245 696 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 13 661 IPR050629 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1245 K08838 - - csv:101214412 1234.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2201 Lac-Chr12:39118102 Lac2g1245 Lac-Chr2:10155119 1.30E-19 dispersed
Lac13g0383 Lac-Chr13:2705705 Lac2g1245 Lac-Chr2:10155119 3.60E-70 dispersed
Lac2g1245 Lac-Chr2:10155119 Lac8g2588 Lac-Chr8:43528216 1.00E-56 dispersed
Lac2g1245 Lac-Chr2:10155119 Lac11g0043 Lac-Chr11:370305 1.00E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1245 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.6 7.8e-222 767.7
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 2.9e-67 254.2
Lac2g1245 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 1.7e-232 803.1
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.3e-67 255.4
Lac13g0383 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.4 2.8e-239 825.9
Lac2g1245 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.5e-67 253.8
Lac8g2588 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 67.6 7.6e-254 874.0
Lac7g0640 . 32 386 MAP Kinase Kinase Kinase Kinase AT5G14720 51.0 1.0e-96 352.1
Lac5g0129 . 7 677 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 5.7e-223 771.5
Lac5g0129 . 11 677 MAP Kinase Kinase Kinase Kinase AT4G10730 61.6 2.7e-222 769.2
Lac5g0129 . 5 339 MAP Kinase Kinase Kinase Kinase AT1G70430 51.4 1.3e-100 364.8
Lac11g0581 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 8.6e-218 754.2
Lac8g2588 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.2e-105 379.4
Lac11g0581 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.2e-87 319.3
Lac5g0129 . 17 251 MAP Kinase Kinase Kinase Kinase AT1G23700 54.2 1.2e-62 238.4
Lac7g0640 . 32 492 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.9e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86017 PF00069 Pkinase 6.40E-68 CL0016 Lac PK