Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1300 ATGGGGTTATTGAAAATGGTGAAAATGAAGTTTGTTTCCATGTCTCTGGTTCTGTCTGTCGTTTTGTTCATGTGTGTTGGATCTTACGCCTCTTTCACTCCCATTGATAACTATTTGATTGCGTGTGGTTCTTCACAAAACATCACCTTCCAAGGTAGAACTTTCGTTCCTGATTCTGGAAATTCATTGCTCTCCCAAGATGGTGGAAGTTTTGTTGTTAGTTCAAAGGGTACCACTGCTCCATCTCCAATCTATCAATCTGCTCGGGTTTTCACGAGCATTGCTTCGTATACATTCAAAATCAAGCAAGAGGGTCGGCATTGGATTCGGCTGTATTTTTATCCTATTCCAAAGTCGGAGCGGAATCTGGTATCTGCGTCGATCACTGTTGTTACTGAGAAGTTTGTGCTGTTGAACAACTTCACTTTCAAGAATTACAATGGTTCTTTTATGTTCAAGGAGTATGCAATCAATGTCACTTCTGATTCCTTGACCCTTACTTTCATCCCATCGAATGGATCAGTTTCGTTTGTTAATGCTATCGAAGTTATCTCAGTGCCTGATGAGCTGCTACCTGATCAAGCATTGGCTTTGAATCCATCTGCTCCTTTTAGCGGTATCTCAGAACTTGCTCTTGAAACTGTTTACCGGTTGAACATGGGGGGTCCTTTACTCACTTCGCAAAACGATACACTCGGAAGGACTTGGGAGAATGATATGAAATACCTCCATGTCAACAGTTCTGCAGTTAATGTCTCTGCCAGCCCAGGGAGCATAAAATATCATCCCGGTGTTACACCAGAGACTGCACCAAATTTGGTTTATGCGACTGCTGATGCCATGGGAGACCCAAATGTACAGAATGTGAACTTCAACTTGACTTGGGTTTTCTCTGTTGAGCCAAATTTTCAGTACTTTGTCCGAGTGCATTTTTGTGATATAATGAGCAAGGTTCTCAATAATCTGGTTTTCAATCTTTACATAAATTCTGATAATGCTCTGGGAAGCTTTGATCTATCATCGTTAACCGGTGACTTGGGCGTGCCTTATTACAAAGACTTCATTTCAAACTCAGCAGATTCAGCTACTTTGACTGTTAGTGTTGGTCCAGATATGATGGCAGACATCACTAATGCAACCATGAATGGCTTGGAGATTTTGAAGATAAGCAATCTAGCCGGGAGCTTGGATGGGACTTCGTCCGTTGAAAGTCTTTTCCCAAATGCGCCCTCGAAGAAGAACAATATAGTAATCATTGTTGGTTCTGTCTTGGGAGCTGTAGTAGGCCTTGCTTTGCTCGTCTTGTGTTATTGCTGCTTCATAGGTCGCAAGTCAAAGACTACTCAACCAGCACACCCATGGCTGCCTTTGCCCTTGTATGGAAACTCTCAAACCATGACGAAAGTATCAACAACTTCTCAAAAGAGTGGAACTGCAAGCTTCATTTCTTTGGCTTCCTCCAGTCTTGGCAGATTCTTCACATTTCAGGAAATCCTTGATGCTACCAACAAGTTTGATGAAAACCTGCTCCTTGGAGTTGGTGGTTTTGGTAGGGTTTACAAGGGAACACTTGAAGATGGTATGAAAGTTGCTGTTAAAAGAGGTAATCCCAGATCGGAACAAGGTCTTGCTGAATTTCGAACTGAAATAGAAATGTTGTCAAAGCTTCGACATCGTCATCTGGTGTCTCTTATTGGCTACTGTGATGAAAGATCAGAAATGGTTCTTGTCTATGAATATATGGCAAACGGACCTCTCAGGAGTCATTTGTATGGAACAGATCTACCACCGTTGTCGTGGAAGCAACGACTTGATATTTGCATTGGTGCTGCGAGAGGGCTTCATTATCTACACACTGGTGCGGCTCAGAGCATTATACACCGAGATGTTAAAACCACAAACATTCTTTTGGACGAGAATTTCGTCGCGAAAGTTGCAGACTTCGGTCTATCAAAAACTGGGCCATCTCTGGATCAGACTCATGTTAGTACTGCTGTCAAGGGTAGTTTTGGTTACCTCGATCCTGAATACTTCAGGCGACAACAGCTCACTGAGAAGTCAGATGTATATTCATTCGGGGTCGTGCTAATGGAAGTTCTATGCACGAGGCCAGCGCTAAACCCTGTTCTGCCCCGAGAACAAGTCAATATAGCAGAATGGGCAATGACCTGGCAGAAGAAGGGCATGCTAGATCATATCATGGACCCGAATCTGGTTGGTAAAGTTAATCCAGCATCGCTTAAGAAGTTCGGTGAAACAGCTGAGAAGTGCCTGGCCGAGTATGGGGTTGACAGGCCATCTATGGGAGATGTCCTGTGGAACCTGGAATACGCTCTCCAGCTCGAGGAAACTTCATCTGCTCTAATGGAACCTGAAGACAACAGCACAAACCACATTCCTACCATCCAACTGACCCCACTTGAGCCATTCGATAACAGTGTAAGCATGATTGATGGAGGGAACTCTGGCACCGACGATGATGCAGAAGATGCTGCAACAAGTGCAGTATTTTCGCAGCTCGTAAATCCTCGTGGGAGATGA 2541 43.8 MGLLKMVKMKFVSMSLVLSVVLFMCVGSYASFTPIDNYLIACGSSQNITFQGRTFVPDSGNSLLSQDGGSFVVSSKGTTAPSPIYQSARVFTSIASYTFKIKQEGRHWIRLYFYPIPKSERNLVSASITVVTEKFVLLNNFTFKNYNGSFMFKEYAINVTSDSLTLTFIPSNGSVSFVNAIEVISVPDELLPDQALALNPSAPFSGISELALETVYRLNMGGPLLTSQNDTLGRTWENDMKYLHVNSSAVNVSASPGSIKYHPGVTPETAPNLVYATADAMGDPNVQNVNFNLTWVFSVEPNFQYFVRVHFCDIMSKVLNNLVFNLYINSDNALGSFDLSSLTGDLGVPYYKDFISNSADSATLTVSVGPDMMADITNATMNGLEILKISNLAGSLDGTSSVESLFPNAPSKKNNIVIIVGSVLGAVVGLALLVLCYCCFIGRKSKTTQPAHPWLPLPLYGNSQTMTKVSTTSQKSGTASFISLASSSLGRFFTFQEILDATNKFDENLLLGVGGFGRVYKGTLEDGMKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMVLVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDHIMDPNLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHIPTIQLTPLEPFDNSVSMIDGGNSGTDDDAEDAATSAVFSQLVNPRGR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10838033 10840573 + Lag0037938.1 Lac2g1300 598564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1300 846 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524(InterPro)
Lac2g1300 846 FunFam receptor-like protein kinase FERONIA 466 580 - -
Lac2g1300 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1300 846 PANTHER OS07G0166700 PROTEIN 493 782 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Lac2g1300 846 Gene3D Transferase(Phosphotransferase) domain 1 581 798 - -
Lac2g1300 846 CDD STKc_IRAK 511 776 - -
Lac2g1300 846 SMART serkin_6 505 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1300 846 SUPERFAMILY Protein kinase-like (PK-like) 482 776 IPR011009 -
Lac2g1300 846 Pfam Protein tyrosine and serine/threonine kinase 511 702 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1300 846 Gene3D Phosphorylase Kinase; domain 1 463 580 - -
Lac2g1300 846 FunFam Receptor-like protein kinase FERONIA 581 797 - -
Lac2g1300 846 ProSiteProfiles Protein kinase domain profile. 505 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1300 846 FunFam Putative receptor-like protein kinase 37 187 - -
Lac2g1300 846 MobiDBLite consensus disorder prediction 810 831 - -
Lac2g1300 846 FunFam Receptor-like protein kinase FERONIA 211 391 - -
Lac2g1300 846 Gene3D - 210 390 - -
Lac2g1300 846 Gene3D - 37 186 - -
Lac2g1300 846 Pfam Malectin-like domain 40 388 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2611 Lac-Chr1:47482091 Lac2g1300 Lac-Chr2:10838033 6.20E-15 dispersed
Lac1g2612 Lac-Chr1:47482504 Lac2g1300 Lac-Chr2:10838033 1.70E-101 dispersed
Lac1g3596 Lac-Chr1:55179870 Lac2g1300 Lac-Chr2:10838033 7.90E-192 dispersed
Lac2g1300 Lac-Chr2:10838033 Lac3g0593 Lac-Chr3:4607524 2.40E-236 dispersed
Lac2g1300 Lac-Chr2:10838033 Lac4g2841 Lac-Chr4:47036274 1.80E-228 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86019 PF12819 Malectin_like 1.40E-37 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1300 - - - 0.0