Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g1312 | ATGATGTTATCCGCATCGCCTTCGACGATAGCTCGGAGCTCACTCGAGGAAATGCTTGATTCCCTTCGACGAAGGGATGAGATTGATAAGCCTAAAGACTTACCGCCTGCATTGCCGTCTCGTCCCACTTCGAATGCTCGGATTCCTCCGGTGAGACGGGCTTTACCGGTCAATTTCAGGGTTAATGATGATGGTTCCCCAGAGTGCTCTATCAAGGGCTGTAATGGAAGGGAAGATGCAATGAGGAAGGAGAATGGTTTCGGTAACTTTGCAGTCAAGAGAATGAAGAGAGATGAAAACGAGGAATCGCCTTACATGTTAGCTTCAGAAAATGATAATAAGGATCAAGTGAATGACTTGAATGGTGCTTTAATGTCAAATATTCAAGGGTCTCACTGGGAGGACAATGTCAGTTATTTCCTTCACAAGAAACTTCGTGTTTGGTGCCAACTTCCAAATGGACAATGGGAGTTAGGAACTATACAGTCAAGCACTGGTGCGGATGCATCTGTCTTGCTCTCAAACAAAAAGGTTATTAAAGTTTCGACTGTAGATCTTTTACCTGCTAATCCAGATATAGTGGAGGGGGTTGATGATCTTGTGCAGCTTGGTTATTTGAACGAGCCTTCAGTTATTCACAGTCTCCAGCGAAGATTCTCTCGGGATAAAATTTATAGTAATGCAGGGTCAGTTTTGATTGCTGTCAACCCGTTGAAAGACACCAAACAGTATGGGAATGAAATTGTTACAGCCTATAGACAAAGAGTCATAAACAGCCCTCATGTTTATGCTACAGCAAATGCTGCCTATTCTGGCATGATGCAAGATGAAGTTAATCAATCGATTATCATCAGTGGCGAAAGTGGAGCAGGGAAAACTGAGACGGCAAAAGTTGCACTTCAGTACTTGACTGCTCTTGGTGGTGGCAGTGGCATAGATGATAGAATCCCACGGGCAAATGTTATACTGGAAGCATTTGGGAATGCTAAAACCTCCAGGAACAACAATGCCAGCAGATTTGGGAAGTTGATTGAAATTCTTTTTAGCAGAACAGGGAAGATATCTGGTGCTGTAATCCAGACTTTTCTGTTGGAAAAGTCAAGAGTTGTTCAGCTGGTCAATGGTGAGAGATCATTCCATGTCTTCTATCAACTTTGTGCTGGAGCACCATCTACACTTAAAGAGAAATTGAATATCAGAGTGGCCAGTGAGTACAGTTATCTCAATCACAGTGAATGCCTGGTGATTGGTGGTGTGGATGATGCACGGAAATTTCATACTCTTGTGGAAGCCCTAGATACACTTCAATTCACAAAGGAAGATCAAGAGCATGCATTTGGTTTGCTTGCTGCAGTTTTGTGGATAGGAAACATCACGTTTCAAACAATTGATAGTGAAAATCATGTGGAGGTCATGGCTAATGAAGCGGTTGCAAATGCTGCCAAGCTGATGGGTTGCAGTGCTAATGAGCTTAAGTTAGTTTTGTCAACCCACAAAGAACAATCTGGCAGGGATAGTGCTAAAAAATTGACATTACGACAGGCAACCGATACAAGAGATGCACTGGCAAAGTTTATCTATGCAAGCTTGTTTGACTGGCTTGTAGAACAGATCAATAAGTCACTTAAACCAGGAAGGGAGCATTCTGGAAGATCCATAAATATCCTCGACATCTATGGGTTTGAGTCATTTAAGAAGAATGGCTTCGAACAATTTTGTATCAATTATGCAAACGAGAGACTGCAGCAGCATTTTATGCGACATCTATTCAAACTTCAGCAGGAGGACTATGAATTTAACGGGGTTGATGGCACAAAAGTCAACTTTGAAGACAATCAAGAGTGTTTGAATCTTATTGAGAAGAGGTCTCTAGGAGTACTAGCTTTGCTGGACGAAGAGTTAACTTTTCCTAAGGCTACAGATCTGACATTTGCTAATAAACTTAAGCAACACTTTAAATCTCATCCTCGCTTTAAAGCGGAAAGAGGTAGGGCTTTTGGTGTTCGCCATTATGCTGGAGAGGTTGTATACGATACAAATGGGTTTTTGGAGAAGAATAGAGATTTGCTGCATTCAGACTCCATCCAACTCTTTTCATCATGTACTTGCAAGCTATTGCAATTATTTGCCTCCAAAATCATTAACCATTCCCACAAACCTACAGTTTCAATGGGCTCTACAGAAGCAGTAGAATCCCTTGAGCCAGGTCTTGGTACCAAGTACAAGGTTCTACTATTTGACCTATTTCATAAATTGGAAAGCACCAGCCATCACTTCATTTGTTGCATAAGACCGAACAGAAATCAAGTTTGTGGCTTGTTTGAGGATGACCTTGTTTTACAACAGCTTAGGTACTGTGGAATTTTGGAGGTTGTTAGGATTTCAAGATCTGGATATCCTATCAGAATGACGCATCAAGAATTTGCTGGAAGGTATGGATTCTTCGTTAAAGAATCTGGTGTATCTCAAGATCCATTGAGTATATCAATTGCTGTTCTGCAACAATTTAATGTCCACCCCGAGATGTACCATGTTGGTTTTACCAAACTATTTTTCAGAACTGGGCAGATTAGGGCATTGGAGGAAAGGAGGACACAGTTTGTGCAAGGCATCCTAGGGGTTCAAAAGTACTTCCGTGGTTGCCATTCCCGTGGCCACTTCCATGAACTTAAGCAAGCCGCCGCTACCTTACAATCATTTATTCGTGGTGAAAATGCCAGAAGGAGATGTTCTGGTAAGGTGAAGAGGTTCTCATTTGTTGTGTACGCTTTCAATGTTCCTAAGAAGGTTTATGAACTGCAGGCAATCATACGATTACAGTCTGTAATACGTGGTTCGTTGGCTCGAAAGAGCATGTGTGATTCGAAGGGGTTTTCTCCTGTAAACAGAAAATCTAAACCAAACACAGGCAGGAGACTTTCAGAGGATAAATTTCAAGCCTTGCCTACAACTCTGACTGAGCTTCAAAAGAGGGTCCTTGCGGCAGAAGCAACCATAGAGAAAAAGGAAGAGGAAAATGCTGCACTGCGAGACCAAGTAAAGCAATTCGAGGCTAGGCGGTTAGAATATGAAGCCAAGATGAAGTCTATGGAGGATAAGTGGCAAAAGCAGATGGCATCTTTGCAAACGAGTCTTGCTGCTGCTAAAAAGACTCTTGCTACTGAAAATGTTGCCTGTCCACCTGGAAGAGTTGATGCTGGTAACTCACCACCTCGCTCTTATGATTCTGAGGATACAACGTCAATGGAATCTCGAACTCCTGGTGCTACGACACCTATAAAAGTTTCTGGAATTTCTGAAGCTGGAGCAGGCAAAGAAATGAATGGTACAGTTGCTGCAGTGAACAATCTTGTAAAGGAATTTGAACAGCGACGAAATGCATTTGATGATGATGCCAAAGCTTTAACTGAAGCAAAGGCACAGACAGGGGCTAATGTAAATCCAGGTGAAGAATACCGTAAAATTAAAGTCCGATTTGAAGCATGGAAGAAGGAGTACAAGGCAAGATTACGGGAAACAAAAGTTAAGTTGATTCAGTTCAGCCATGTGAATGGATGGAGAGCTCTTGAAAAGAAGGGAGAGAACATTGTCAAGTTGTCTTCTTTTGACAACTCGTGGGGTGTTGAAGCTGAACCTGACAAAGCCGAGAAGTGCATCGTGCGTTCGCAGGATGGAGGAGAGTGTTCAGAAGCATTGTGTATAGCTAAATAG | 3711 | 42.28 | MMLSASPSTIARSSLEEMLDSLRRRDEIDKPKDLPPALPSRPTSNARIPPVRRALPVNFRVNDDGSPECSIKGCNGREDAMRKENGFGNFAVKRMKRDENEESPYMLASENDNKDQVNDLNGALMSNIQGSHWEDNVSYFLHKKLRVWCQLPNGQWELGTIQSSTGADASVLLSNKKVIKVSTVDLLPANPDIVEGVDDLVQLGYLNEPSVIHSLQRRFSRDKIYSNAGSVLIAVNPLKDTKQYGNEIVTAYRQRVINSPHVYATANAAYSGMMQDEVNQSIIISGESGAGKTETAKVALQYLTALGGGSGIDDRIPRANVILEAFGNAKTSRNNNASRFGKLIEILFSRTGKISGAVIQTFLLEKSRVVQLVNGERSFHVFYQLCAGAPSTLKEKLNIRVASEYSYLNHSECLVIGGVDDARKFHTLVEALDTLQFTKEDQEHAFGLLAAVLWIGNITFQTIDSENHVEVMANEAVANAAKLMGCSANELKLVLSTHKEQSGRDSAKKLTLRQATDTRDALAKFIYASLFDWLVEQINKSLKPGREHSGRSINILDIYGFESFKKNGFEQFCINYANERLQQHFMRHLFKLQQEDYEFNGVDGTKVNFEDNQECLNLIEKRSLGVLALLDEELTFPKATDLTFANKLKQHFKSHPRFKAERGRAFGVRHYAGEVVYDTNGFLEKNRDLLHSDSIQLFSSCTCKLLQLFASKIINHSHKPTVSMGSTEAVESLEPGLGTKYKVLLFDLFHKLESTSHHFICCIRPNRNQVCGLFEDDLVLQQLRYCGILEVVRISRSGYPIRMTHQEFAGRYGFFVKESGVSQDPLSISIAVLQQFNVHPEMYHVGFTKLFFRTGQIRALEERRTQFVQGILGVQKYFRGCHSRGHFHELKQAAATLQSFIRGENARRRCSGKVKRFSFVVYAFNVPKKVYELQAIIRLQSVIRGSLARKSMCDSKGFSPVNRKSKPNTGRRLSEDKFQALPTTLTELQKRVLAAEATIEKKEEENAALRDQVKQFEARRLEYEAKMKSMEDKWQKQMASLQTSLAAAKKTLATENVACPPGRVDAGNSPPRSYDSEDTTSMESRTPGATTPIKVSGISEAGAGKEMNGTVAAVNNLVKEFEQRRNAFDDDAKALTEAKAQTGANVNPGEEYRKIKVRFEAWKKEYKARLRETKVKLIQFSHVNGWRALEKKGENIVKLSSFDNSWGVEAEPDKAEKCIVRSQDGGECSEALCIAK | 1236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 10928078 | 10937690 | + | Lag0037950.1 | Lac2g1312 | 598576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g1312 | 1236 | Gene3D | - | 377 | 433 | - | - | |
| Lac2g1312 | 1236 | ProSiteProfiles | Myosin motor domain profile. | 195 | 865 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | ProSiteProfiles | IQ motif profile. | 890 | 918 | - | - | |
| Lac2g1312 | 1236 | MobiDBLite | consensus disorder prediction | 1072 | 1093 | - | - | |
| Lac2g1312 | 1236 | Gene3D | - | 564 | 755 | - | - | |
| Lac2g1312 | 1236 | Gene3D | - | 799 | 866 | - | - | |
| Lac2g1312 | 1236 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Lac2g1312 | 1236 | Coils | Coil | 1118 | 1138 | - | - | |
| Lac2g1312 | 1236 | CDD | MYSc_Myo8 | 209 | 853 | IPR036022 | - | |
| Lac2g1312 | 1236 | MobiDBLite | consensus disorder prediction | 1057 | 1094 | - | - | |
| Lac2g1312 | 1236 | Coils | Coil | 985 | 1033 | - | - | |
| Lac2g1312 | 1236 | Pfam | Myosin head (motor domain) | 197 | 853 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 148 | 911 | IPR027417 | - | |
| Lac2g1312 | 1236 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 142 | 191 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | FunFam | Myosin heavy chain | 377 | 433 | - | - | |
| Lac2g1312 | 1236 | Gene3D | Kinesin motor domain | 194 | 798 | IPR036961 | - | |
| Lac2g1312 | 1236 | SMART | MYSc_2a | 189 | 866 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | PRINTS | Myosin heavy chain signature | 225 | 244 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | PRINTS | Myosin heavy chain signature | 279 | 304 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | PRINTS | Myosin heavy chain signature | 605 | 633 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | PRINTS | Myosin heavy chain signature | 321 | 348 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | PRINTS | Myosin heavy chain signature | 552 | 580 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac2g1312 | 1236 | SMART | iq_5 | 866 | 888 | IPR000048 | GO:0005515(InterPro) | |
| Lac2g1312 | 1236 | SMART | iq_5 | 889 | 911 | IPR000048 | GO:0005515(InterPro) | |
| Lac2g1312 | 1236 | SMART | iq_5 | 931 | 953 | IPR000048 | GO:0005515(InterPro) | |
| Lac2g1312 | 1236 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Lac2g1312 | 1236 | Gene3D | - | 871 | 916 | - | - | |
| Lac2g1312 | 1236 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 434 | 541 | - | - | |
| Lac2g1312 | 1236 | ProSiteProfiles | IQ motif profile. | 932 | 960 | - | - | |
| Lac2g1312 | 1236 | Pfam | IQ calmodulin-binding motif | 934 | 951 | IPR000048 | GO:0005515(InterPro) | |
| Lac2g1312 | 1236 | Pfam | IQ calmodulin-binding motif | 892 | 910 | IPR000048 | GO:0005515(InterPro) | |
| Lac2g1312 | 1236 | PANTHER | MYOSIN | 146 | 1199 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac2g1312 | 1236 | MobiDBLite | consensus disorder prediction | 17 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0849 | Lac-Chr13:6846640 | Lac2g1312 | Lac-Chr2:10928078 | 2.40E-303 | dispersed | |
| Lac2g1312 | Lac-Chr2:10928078 | Lac7g0513 | Lac-Chr7:4083896 | 1.10E-149 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac2g1312 | K10357 | - | csv:101210624 | 1947.94 |