Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1328 ATGGCGATTCCTCCTCTAAAATCCTTCGTTACAACGACCATAACTCTGTTTCTGTCTCTGTTTCTCTTCTCTTCGCCGTCTGTGGCCGTTGATTTCTTAACAGCTTCTCAAAACCTCACCGATGGCGCCACCCTGGTCTCGGAGAAAGGGTTTTTCGAACTGGGTTTCTTCCGCCCTGGGAATTCCACGAACCGTTACTTGGGAATTTGGTACAAAATCATCCCGATTCACACAATCGTTTGGGTCGCCAACAGAGAAAAACCCATCACGAATTCTTCCGCCGTTTTCAAAATCAACACCACGACGAGCTCTCCCGTTCTCCTCCAGAACGACGCCGTTCTTTGGTCTGGTAAATCGTTGAAACCAGTGGGAAATGGCGATCTCAAGCTACAGCTCTTGGACAATGGAAATCTGGTGTTGAAGGACGAAAAATCGGGTGCGATTTCATGGCAGAGCTTCGATTACCCGACGGATACATTACTACCCGGAATGAAGCTCGGATGGGACTACGTAAACGGAATCCACCGAACGTTATCGGCCTGGAAAAGCTCCGACGACCCATCTCCGGGGAGTTTAACAATGGAAATGATGAAAACAAACTACCCAGAGCCGGTGATGTGGAACGGCTCGAAAGAGTTCATGAGGAGCGGACCATGGAACGGCCTTCAATTTAGCGCAAAACCCACATCGGCTCTACCGATTTTGGTCTACACCTACGTAAACAACAAAACCGAGCTCACCTACAGCTACGAGCTCATAAACTCCTCATTGATCGGAAGAATGGTCTTGAATCAGACCGCCTTCAGAAGAGAGGCTTTGCTATGGTCGGAATCCGCGAAGATTTGGCAGCGCTACGCCACTATGCCGAGGGATTACTGCGACACGTACGGGCTCTGCGGCGCGTTTGGGAGCTGCAACATTGAGCTAATGCCGGCTTGTCAATGTCTACAAGGGTTTCATCCGAAAGTACAGGAGAAATGGAATTTGATGGATTATACAGAAGGGTGTGTGAGAAATCGGCCGTTGAATTGCTCCGATGAAGTTGGGTTTGCTGTATTGCCGGGGCTGAAATTGCCTGATACGAAACTGTCGTGGGTTAATGAGAGTATGAGCTTGAGTGAGTGCAGAGACAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCGAATACGGACATTAGGGGATCGGGGAGTGGCTGTGCGATTTGGGTTGGGGAACTTCTTGATATCAAAGTGGTTCAAAAAGGGGGACAGGATTTGTATGTTAAAATGTTGGCTTCTGAATTGGAGACAAAGAAATCGAGTTCGGTTGTGGTCGGCGTTATCGTCGGAGTGGCGGTTCTTGTGATTGCTGGTCTGGTTCTGGTTGGGTTTTACATTATCAGAAGTAGGAGGAGAGGTATGGAAGGCAAAGATCTTGAAGGGCAAGGAGAAGATTTGGAGCTCCCATTATTCGACTTAACAACAATATCTAATGCCACAGACAATTTTTCAAACTCCAACAAGCTTGGAGAAGGCGGTTTTGGTGCAGTCTTTAGGGGTAGACTCGTAAATGGACAGGAAATTGCAGTTAAGAGACTTTCTAGCTATTCGAGACAGGGGACTGATGAATTCAAGAACGAAGTGATACTCATTGCCAAACTTCAACATCGAAATCTCGTAAAACTTTTGGGTTGTTGCATCCAAGGGAGGAAAAGATATCCTACTAGAAAGAAACTTTTAGATTGGTCTAAACGATTCAATATCATATGCGGAATAGCTAGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGGGATTTAAAAGCAAGTAATGTCTTGCTTGATATTGACATGAATCCAAAAATCTCAGATTTTGGAATGGCTAGAACGTTTGGAGGGGATCAAACTGAAGGAAATACAAGGAGAGTGGTTGGAACATATGGGTATATGGCACCAGAATACGCCATTGATGGACAATTCTCGATTAAATCCGATGTCTTTAGTTTTGGGATTTTATTGTTGGAGATCATAAGTGGAGAGAAGAATAGAGGTTTTTTTCGTCCTAACCATGCTCTCAATCTTATTGGACATTCATGGAAGTTATGGAACGAAGGAAAACCATTAGAGTTGATCGATGCAACCATTGGAGACTCTTACTCTCTATCTGAAGTGGTGCGATGCATCCATGTTAGCCTTTTGTGCTTGCAACAACATCCCGATGATAGACCAACCATGTCGAATGTGGTTCTGATGCTGAGTAGTGAGAGTGCTTTGGTGCAACCAAAACAACCAGGATTCTACATGGAAAGAGATTCTCTTGAAGGAGACTCTCTTTCGGGCAAGAATGAATCTTCCACTAATGAATTAACTATTACCCTCATGGAAGCTAGATAG 2391 45.0 MAIPPLKSFVTTTITLFLSLFLFSSPSVAVDFLTASQNLTDGATLVSEKGFFELGFFRPGNSTNRYLGIWYKIIPIHTIVWVANREKPITNSSAVFKINTTTSSPVLLQNDAVLWSGKSLKPVGNGDLKLQLLDNGNLVLKDEKSGAISWQSFDYPTDTLLPGMKLGWDYVNGIHRTLSAWKSSDDPSPGSLTMEMMKTNYPEPVMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYTYVNNKTELTYSYELINSSLIGRMVLNQTAFRREALLWSESAKIWQRYATMPRDYCDTYGLCGAFGSCNIELMPACQCLQGFHPKVQEKWNLMDYTEGCVRNRPLNCSDEVGFAVLPGLKLPDTKLSWVNESMSLSECRDKCLRNCSCVAFANTDIRGSGSGCAIWVGELLDIKVVQKGGQDLYVKMLASELETKKSSSVVVGVIVGVAVLVIAGLVLVGFYIIRSRRRGMEGKDLEGQGEDLELPLFDLTTISNATDNFSNSNKLGEGGFGAVFRGRLVNGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGRKRYPTRKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFFRPNHALNLIGHSWKLWNEGKPLELIDATIGDSYSLSEVVRCIHVSLLCLQQHPDDRPTMSNVVLMLSSESALVQPKQPGFYMERDSLEGDSLSGKNESSTNELTITLMEAR 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11106976 11110478 + Lag0037966.1 Lac2g1328 598592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1328 796 Gene3D - 27 153 IPR036426 -
Lac2g1328 796 SMART serkin_6 497 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1328 796 PIRSF SRK 2 796 IPR024171 GO:0004674(InterPro)
Lac2g1328 796 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524(InterPro)
Lac2g1328 796 Gene3D Transferase(Phosphotransferase) domain 1 565 764 - -
Lac2g1328 796 CDD PAN_AP_plant 341 423 - -
Lac2g1328 796 Pfam S-locus glycoprotein domain 215 322 IPR000858 GO:0048544(InterPro)
Lac2g1328 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 567 - -
Lac2g1328 796 Pfam PAN-like domain 344 410 IPR003609 -
Lac2g1328 796 Pfam D-mannose binding lectin 78 182 IPR001480 -
Lac2g1328 796 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 765 - -
Lac2g1328 796 Gene3D Phosphorylase Kinase; domain 1 473 564 - -
Lac2g1328 796 SUPERFAMILY Protein kinase-like (PK-like) 482 751 IPR011009 -
Lac2g1328 796 MobiDBLite consensus disorder prediction 771 796 - -
Lac2g1328 796 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Lac2g1328 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 564 759 - -
Lac2g1328 796 SMART ntp_6 345 424 IPR003609 -
Lac2g1328 796 Pfam Domain of unknown function (DUF3403) 752 796 IPR021820 GO:0004674(InterPro)
Lac2g1328 796 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 153 - -
Lac2g1328 796 ProSiteProfiles Protein kinase domain profile. 497 757 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1328 796 SMART blect_4 36 156 IPR001480 -
Lac2g1328 796 CDD B_lectin 39 156 IPR001480 -
Lac2g1328 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1328 796 MobiDBLite consensus disorder prediction 777 796 - -
Lac2g1328 796 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
Lac2g1328 796 Gene3D Hepatocyte Growth Factor 342 426 - -
Lac2g1328 796 Pfam Protein tyrosine and serine/threonine kinase 500 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1328 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0661 Lac-Chr12:6875543 Lac2g1328 Lac-Chr2:11106976 1.10E-126 dispersed
Lac2g1328 Lac-Chr2:11106976 Lac5g1623 Lac-Chr5:33054586 6.00E-258 dispersed
Lac2g1330 Lac-Chr2:11127507 Lac2g1328 Lac-Chr2:11106976 5.90E-12 dispersed
Lac2g1328 Lac-Chr2:11106976 Lac2g1329 Lac-Chr2:11118071 1.9e-312 tandem
Lac12g1699 Lac-Chr12:32794354 Lac2g1328 Lac-Chr2:11106976 1.60E-22 transposed
Lac2g1269 Lac-Chr2:10479681 Lac2g1328 Lac-Chr2:11106976 1.70E-78 transposed
Lac3g2820 Lac-Chr3:44811833 Lac2g1328 Lac-Chr2:11106976 4.70E-06 transposed
Lac10g0779 Lac-Chr10:6135944 Lac2g1328 Lac-Chr2:11106976 1.10E-64 wgd
Lac2g1328 Lac-Chr2:11106976 Lac9g2105 Lac-Chr9:40710714 4.60E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86020 PF07714 PK_Tyr_Ser-Thr 6.30E-37 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1328 - - - 0.0