Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1358 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTAACGGATGCGAATTTCCCAGTCACGAGTTCAAGCTTCTCGTGGGCTGTTCAATCCTTCAACGCTACCCCTGATGTCGGTGTGGAAGTTGATGGATCATTGGCAGATCTAGATGGCCGTCTAGAATCTGGCTCAAAGAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATCTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTCGATGCTGTCCGAATGGTTAATCAGTTGCGTGGCGAAGCCCACAAACTAAAGGAATCAAATTCAAGTCTCCAAGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAATGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAAGCTAGAGCAGCAAATGAAGTCCATGCATGCTCAACCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAGTAAGTTAGTTCCATTCATTGGTTACCATCCAGGAGTTGCCATGTGGCAGTTCATGCCGCCTGCAGCAGTGGACACGTCACAGGACCACGTACTCCGTCCACCAGTCGCCTAA 705 48.94 MVSPENPNWLFDYGLIDDIPVTDANFPVTSSSFSWAVQSFNATPDVGVEVDGSLADLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRGEAHKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKEKLEQQMKSMHAQPGFLPPPIPTFAAQGQAPGSKLVPFIGYHPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11426874 11429194 + Lag0037996.1 Lac2g1358 598622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1358 234 Gene3D - 66 124 IPR036638 GO:0046983(InterPro)
Lac2g1358 234 FunFam Transcription factor bHLH104 78 159 - -
Lac2g1358 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Lac2g1358 234 PANTHER BHLH TRANSCRIPTION FACTOR 8 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lac2g1358 234 CDD bHLH_AtILR3_like 83 155 - -
Lac2g1358 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Lac2g1358 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
Lac2g1358 234 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 178 - -
Lac2g1358 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Lac2g1358 234 Coils Coil 123 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0758 Lac-Chr10:5859681 Lac2g1358 Lac-Chr2:11426874 2.30E-50 transposed
Lac1g3004 Lac-Chr1:50752125 Lac2g1358 Lac-Chr2:11426874 1.70E-09 transposed
Lac5g1493 Lac-Chr5:29885775 Lac2g1358 Lac-Chr2:11426874 2.60E-84 transposed
Lac7g0603 Lac-Chr7:4819218 Lac2g1358 Lac-Chr2:11426874 5.50E-28 transposed
Lac9g1781 Lac-Chr9:37540132 Lac2g1358 Lac-Chr2:11426874 6.90E-10 transposed
Lac2g1358 Lac-Chr2:11426874 Lac9g2079 Lac-Chr9:40394046 9.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23505 PF00010 HLH 1.10E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1358 - - - 0.0