Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1369 ATGGCAAAATTAGGGTTTGCATTTGGGGCTTTGATGTGTGTAATGATGTTGTTGCAGAAAGGAGATGGCACTGAGTTCACAGTTGGAGGAGCAAAGGGTTGGGGAGTTTCAGTGGCACAAAGCTATAATCAATGGGCAGAAGCCAACAGGTTTCAAATTGGAGACTCTTTAGTTTTCAACTATTCTGCTGATCAAGACTCAGTGCTTCAAGTAACCCAAGATGCCTACAACAACTGCAGCATCCAAACTCCAATAAAACAGTATTCTGATGGCCACACTGTTTTCCAATTTGACAAATCTGGGCCTTACTATTTTATCAGTGGAAACAAAGACAATTGCCTAAAAAATCAGAAGCTGGTGGTGGTTGTGTTGGCTGATAGAACCAATTCAAGTTCTAATCAGACCAGCTCTCTGCCTCCTCCAACCTCTGCTCCATCTCCATCCCCATTTCCTTCTCCCTCAAATTCAACTGAGACAACACCTTCTCCTGCACCGGCAAATGATCAAACCGGCGGGCCTTCTCCTCCTCCACCGTCAGGGTCGACTGAGATCACCCCGTCTCCGCCACCTGCTGAGGAAACCAACCCACCTCCTCCTCCACCTGCTGAGGAATTCAATCCATCTCCGACGCCTGCTGGGGAAGAGTCTCCTTCTCCGACTCCGCCTCCAAGGACGGTTGAGATCAACCCTGCACCTCCAAGTTTCGGATCTTCGATCATCCCGAGCAGCATTGGCTCCATTGGAGCATTTGTTGCTGCTGTTATCTTAGCTTTCTAA 777 48.13 MAKLGFAFGALMCVMMLLQKGDGTEFTVGGAKGWGVSVAQSYNQWAEANRFQIGDSLVFNYSADQDSVLQVTQDAYNNCSIQTPIKQYSDGHTVFQFDKSGPYYFISGNKDNCLKNQKLVVVVLADRTNSSSNQTSSLPPPTSAPSPSPFPSPSNSTETTPSPAPANDQTGGPSPPPPSGSTEITPSPPPAEETNPPPPPPAEEFNPSPTPAGEESPSPTPPPRTVEINPAPPSFGSSIIPSSIGSIGAFVAAVILAF 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11549615 11551305 + Lag0038007.1 Lac2g1369 598633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1369 258 Gene3D - 23 129 IPR008972 -
Lac2g1369 258 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055(InterPro)
Lac2g1369 258 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Lac2g1369 258 FunFam Early nodulin-like protein 1 23 128 - -
Lac2g1369 258 Pfam Plastocyanin-like domain 34 116 IPR003245 GO:0009055(InterPro)
Lac2g1369 258 MobiDBLite consensus disorder prediction 168 229 - -
Lac2g1369 258 MobiDBLite consensus disorder prediction 140 158 - -
Lac2g1369 258 PANTHER BLUE COPPER PROTEIN 15 159 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Lac2g1369 258 CDD OsENODL1_like 24 124 IPR041846 -
Lac2g1369 258 MobiDBLite consensus disorder prediction 130 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1369 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1369 Lac-Chr2:11549615 Lac5g1434 Lac-Chr5:28717383 3.90E-41 dispersed
Lac2g1369 Lac-Chr2:11549615 Lac9g2175 Lac-Chr9:41218947 3.10E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1369 . 11 140 Phytocyanin Superfamily AT3G20570 57.3 3.5e-37 152.5
Lac10g0209 . 10 134 Phytocyanin Superfamily AT1G48940 57.9 4.0e-37 152.1
Lac8g0987 . 30 176 Phytocyanin Superfamily AT3G01070 53.0 5.8e-38 154.8
Lac6g0590 . 7 170 Phytocyanin Superfamily AT2G25060 55.4 4.9e-46 181.8
Lac8g0987 . 29 183 Phytocyanin Superfamily AT5G15350 52.3 2.3e-45 179.5
Lac6g0590 . 8 170 Phytocyanin Superfamily AT4G31840 55.8 9.5e-47 184.1
Lac10g0209 . 26 134 Phytocyanin Superfamily AT3G18590 64.5 1.6e-36 150.2
Lac9g2175 . 15 132 Phytocyanin Superfamily AT4G32490 56.8 2.2e-37 153.3
Lac9g2175 . 14 148 Phytocyanin Superfamily AT4G28365 53.3 1.3e-36 150.6
Lac9g2175 . 15 132 Phytocyanin Superfamily AT4G32490 56.8 2.2e-37 153.3
Lac10g0209 . 26 134 Phytocyanin Superfamily AT3G18590 64.5 1.6e-36 150.2
Lac10g0209 . 10 134 Phytocyanin Superfamily AT1G48940 57.9 4.0e-37 152.1
Lac2g1369 . 11 140 Phytocyanin Superfamily AT3G20570 57.3 3.5e-37 152.5
Lac6g0590 . 18 137 Phytocyanin Superfamily AT5G57920 52.9 6.3e-37 151.8
Lac6g0590 . 9 170 Phytocyanin Superfamily AT5G25090 52.7 2.2e-41 166.4
Lac6g0590 . 7 170 Phytocyanin Superfamily AT2G25060 55.4 4.9e-46 181.8
Lac6g0590 . 8 170 Phytocyanin Superfamily AT4G31840 55.8 9.5e-47 184.1
Lac8g0987 . 30 176 Phytocyanin Superfamily AT3G01070 53.0 5.8e-38 154.8
Lac8g0987 . 29 183 Phytocyanin Superfamily AT5G15350 52.3 2.3e-45 179.5
Lac9g2763 . 22 237 Phytocyanin Superfamily AT1G08500 54.1 1.1e-55 214.2
Lac3g1248 . 31 146 Phytocyanin Superfamily AT2G27035 56.9 3.7e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51