Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1379 ATGATCTGCACGGTGAAACAGTCTGCTAGGGCTATCAATTGCTCTGATGGTGTTATTCGGAGCAAAATCTCGGTTCCCTCTCAGCGATCCTCGTTTCTTCCTCCTCTTCCGGTGCAGAAACCTCGAAACTCGGCCCTTTCTGTTCATAAGGCTGTACATGTTTCTTCGCTTGAGAATTTTGGATCACTTGGGGTTCGTAAAGCTAATTTGATCAAATGCGAAGCTTACAAGGCCGAGCGATCGCAGCCGATCGAATCGAGCTTTGAGCTGCCGCAGAGTCAGGGTCCTTCCGAGGCTGCGAAGAAGGTGAAGATTGGGTCGTACTTTGCTCTTTGGTGGGCTTTGAACGTGGTTTTCAATATCTACAACAAGAAGGTTTTGAACGCGTATCCGTATCCATGGCTGACCTCGACTCTGTCGCTCGCCGCCGGATCTCTGATCATGTTGATCTCATGGATGACGAGAATTGCTGAGGCGCCGAAAACCGATTTCGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTATTGCCCATACAATTGGACATGTTGCTGCAACCGTGAGTATGTCAAAGGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGGGAACCTGCTTTCAGCGTATTGGTTTCAAGGCTCTTGTTGGGTGAGACCTTCCCACTTCCTGTCTACTTGTCGCTCCTCCCAATTATCGGTGGGTGCGCTCTCGCTGCTGTGACTGAGCTCAACTTTAACATGACGGGTTTCATGGGTGCCATGATATCAAACTTGGCATTTGTGTTCCGTAACATATTTTCGAAGAGGGGCATGAAGGGAAAATCTGTTAGCGGGATGAACTACTATGCGTGTTTGTCAATTTTATCTTTGTTAATCCTGACGCCATTTGCATTTGCTGTGGAGGGACCACAGTTATGGGCTGATGGATGGCAAAGAGCAATCTCTCAAATTGGACCTCATTTCATTTGGTGGGTTGCAGCACAAAGTATATTCTACCATCTCTATAACCAGGTGTCTTACATGTCCTTGGATGAGATTTCTCCCTTGACGTTCAGCATCGGAAACACCATGAAACGTATATCGGTCATAGTTTCTTCCATCATCATCTTCCACACACCTGTGCAGCCAGTCAACGCTCTCGGAGCTGCCATTGCAATTCTTGGAACCTTCATATATTCGCAGAATGAATTCATCAATGCTGAGGAATATGCTTAG 1212 46.78 MICTVKQSARAINCSDGVIRSKISVPSQRSSFLPPLPVQKPRNSALSVHKAVHVSSLENFGSLGVRKANLIKCEAYKAERSQPIESSFELPQSQGPSEAAKKVKIGSYFALWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDFEFWKSLFPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRLLLGETFPLPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLLILTPFAFAVEGPQLWADGWQRAISQIGPHFIWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPVNALGAAIAILGTFIYSQNEFINAEEYA 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11655710 11658747 + Lag0038017.1 Lac2g1379 598643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1379 403 PANTHER SOLUTE CARRIER FAMILY 35 99 393 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Lac2g1379 403 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Lac2g1379 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Lac2g1379 403 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1379 Lac-Chr2:11655710 Lac7g0352 Lac-Chr7:2718983 6.20E-86 dispersed
Lac5g1426 Lac-Chr5:28551689 Lac2g1379 Lac-Chr2:11655710 1.70E-181 transposed
Lac1g3227 Lac-Chr1:52232091 Lac2g1379 Lac-Chr2:11655710 4.70E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1379 K15283 - csv:101220046 721.079