Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1400 ATGTTGAGGTTGGTGTTGGCAATACCTTCCACACTTCAACAATGGTGGTTGGTTGACTTTAAGGAGGAGGTTTTGGATAGAGCTCTTCGGTTCTTCGTCGACGCGTTGAAGAAGATCGCTTTCGCTTTGATTCTATGTCTTCTTGCTCTCGTTGGTGCATCGGTGGGGACGGTGATCGGAGCTTTCAAAGGCCATGGCACGAGCATAGGCGCTATTGCTGGCGCTGCTGTAGTCCTTCAACTATTGAACTACGACGTTGTATCTGAGCATGGATATTCTTTATCAAAGGAAGCAATAATGGAGAGCCTGATGGATGGGAAGAACTTGATGAACTGGGCGAGAAACTTCTCGGAGTATATGTACCGAGAGATATCGGACTTCGTCGACGTCGCCGGAGAAAGTTGTGTGGAAGGGATGTCAATGGAGATTGTTCAAAAGTTGCCTGTTTGTGAATATGATCATAGCAAGATGAAAAACTCCATTTCTTGTTCCATTTGCTTGGAGGTCATAGGTACTCATACTATGGAAGGTTCAATTCTTAGAAGGGTTATTCCATCAGACAACAGTTGTCTCTTCAATGCTGTTGGGTATGTTATGGACCATGATAAACACAAGGCTACTGAGCTAAGACAGGTCATAGCTGCAACAGTAGCTAGTGATCCAACAAGGTATTCTGAAGCATTTCTTGGAAAGCCAAATGAGGAGTATTGTGCTTGGATTCTTGATTCAGAGAAGTGGGGAGGCGCCATTGAGCTTTCGATATTATCCGAATATTATGGGCGTGAAATTGCAGCATATGATATCCAGACCACACGATGCGATTTGTATGGTCAGGAGAAGAAGTATTCAGAAAGGGTTCTGCTGATATATGATGGACTCCACTATGATGCTTTAGTTATGTCTCCATCTGAGGGAGCTCCAGAGGAATTTGATCAGACCATATTTTCTGTGAATAGGGACAGGACAATTGGGCCCATTGAGGAGCAAGCTCTTCATTTTGTAAAAGAGCAGCAAAGGAAAAGGAGATTCACCGACACCGCTAACTTCACTCTGCGCTGTGGAGTTTGCCAAATTGGAGTCATTGGCCAAACGGAGGCTGTAGAACACGCAAAAGCGACAGGTCATGTCAACTTTCAAGAGTATAGATAA 1149 44.39 MLRLVLAIPSTLQQWWLVDFKEEVLDRALRFFVDALKKIAFALILCLLALVGASVGTVIGAFKGHGTSIGAIAGAAVVLQLLNYDVVSEHGYSLSKEAIMESLMDGKNLMNWARNFSEYMYREISDFVDVAGESCVEGMSMEIVQKLPVCEYDHSKMKNSISCSICLEVIGTHTMEGSILRRVIPSDNSCLFNAVGYVMDHDKHKATELRQVIAATVASDPTRYSEAFLGKPNEEYCAWILDSEKWGGAIELSILSEYYGREIAAYDIQTTRCDLYGQEKKYSERVLLIYDGLHYDALVMSPSEGAPEEFDQTIFSVNRDRTIGPIEEQALHFVKEQQRKRRFTDTANFTLRCGVCQIGVIGQTEAVEHAKATGHVNFQEYR 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11826531 11836319 - Lag0038038.1 Lac2g1400 598664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1400 382 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 170 380 - GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)|GO:0030433(PANTHER)|GO:0030968(PANTHER)
Lac2g1400 382 CDD OTU_plant_OTU1_2-like 177 340 - -
Lac2g1400 382 FunFam ubiquitin thioesterase OTU1 175 347 - -
Lac2g1400 382 ProSiteProfiles OTU domain profile. 179 301 IPR003323 -
Lac2g1400 382 Pfam OTU-like cysteine protease 185 281 IPR003323 -
Lac2g1400 382 SUPERFAMILY Cysteine proteinases 181 299 IPR038765 -
Lac2g1400 382 Gene3D - 168 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1400 Lac-Chr2:11826531 Lac12g1641 Lac-Chr12:31489396 6.60E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1400 K13719 - csv:101222942 408.683