Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g1404 | ATGATAGGATCCCCGTGCGGATTTATGAGCTTCCTCCTCAACCAAAGGCGAGATCCCGATTTCTCAATCTCCGGCCACCGAGCCACCTTTCTTCACAAGCAGTTGAAGATGCCATCGGCTCAGGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAGTAAAACTCACAAAAGAGTTGCTCGCTTCCTGTGAGAGCATTGAGTGGCAGGTGGACGAATTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTTTGGCATTGATGAAGCAGAACTTGAAAAACGTAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTTAAGAAAGTAGTGGGAGCTGGGAAGGAGCAAACTGGAACTACCAGTGCAAATGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACACGAAACAGAGAGATCAAACTTATATACAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGGCAGCTGCTTCTCATAAAGCAGCAGGACGAAGAGTTGGATGAGCTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAACTCCTCGCACAGGATAAAATTATTGACGAGCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTCGTTCAGAAAAAAGTGGCTGTGGTAATGAAGAAGGCCAGCGCCAAGGGCCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCGTCACCTAG | 849 | 45.47 | MIGSPCGFMSFLLNQRRDPDFSISGHRATFLHKQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDPGERVKLTKELLASCESIEWQVDELDKAIAVAARDPSWFGIDEAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTTSANGMRRELMRLPNAHETERSNLYTAHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDELGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFVT | 282 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11879253 | 11883304 | - | Lag0038042.1 | Lac2g1404 | 598668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g1404 | 282 | SMART | tSNARE_6 | 185 | 252 | IPR000727 | - | |
Lac2g1404 | 282 | CDD | SNARE_NTD_AtSYP61-like | 41 | 138 | - | - | |
Lac2g1404 | 282 | ProSitePatterns | Syntaxin / epimorphin family signature. | 196 | 235 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Lac2g1404 | 282 | PANTHER | SYNTAXIN | 44 | 271 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lac2g1404 | 282 | FunFam | syntaxin-61 isoform X1 | 193 | 254 | - | - | |
Lac2g1404 | 282 | Pfam | SNARE domain | 227 | 278 | IPR000727 | - | |
Lac2g1404 | 282 | CDD | SNARE_Qc | 193 | 250 | - | - | |
Lac2g1404 | 282 | FunFam | Syntaxin 10 | 39 | 141 | - | - | |
Lac2g1404 | 282 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 190 | 252 | IPR000727 | - | |
Lac2g1404 | 282 | Pfam | Syntaxin 6, N-terminal | 42 | 135 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
Lac2g1404 | 282 | Gene3D | - | 197 | 261 | - | - | |
Lac2g1404 | 282 | SUPERFAMILY | SNARE fusion complex | 189 | 252 | - | - | |
Lac2g1404 | 282 | Coils | Coil | 228 | 248 | - | - | |
Lac2g1404 | 282 | Gene3D | - | 38 | 140 | - | - | |
Lac2g1404 | 282 | SUPERFAMILY | t-snare proteins | 41 | 136 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g1404 | K08500 | - | csv:101212527 | 404.445 |