Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1404 ATGATAGGATCCCCGTGCGGATTTATGAGCTTCCTCCTCAACCAAAGGCGAGATCCCGATTTCTCAATCTCCGGCCACCGAGCCACCTTTCTTCACAAGCAGTTGAAGATGCCATCGGCTCAGGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATCCAGGAGAGAGAGTAAAACTCACAAAAGAGTTGCTCGCTTCCTGTGAGAGCATTGAGTGGCAGGTGGACGAATTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTTTGGCATTGATGAAGCAGAACTTGAAAAACGTAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTTAAGAAAGTAGTGGGAGCTGGGAAGGAGCAAACTGGAACTACCAGTGCAAATGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACACGAAACAGAGAGATCAAACTTATATACAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGATAGGCAGCTGCTTCTCATAAAGCAGCAGGACGAAGAGTTGGATGAGCTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAACTCCTCGCACAGGATAAAATTATTGACGAGCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTCGTTCAGAAAAAAGTGGCTGTGGTAATGAAGAAGGCCAGCGCCAAGGGCCAGATAATGATGATATTGTTCTTGGTGGCTTTGTTCATCATCCTTTTTGTGTTGGTGTTCGTCACCTAG 849 45.47 MIGSPCGFMSFLLNQRRDPDFSISGHRATFLHKQLKMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDPGERVKLTKELLASCESIEWQVDELDKAIAVAARDPSWFGIDEAELEKRRRWTSTARTQVGNVKKVVGAGKEQTGTTSANGMRRELMRLPNAHETERSNLYTAHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDELGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFVT 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11879253 11883304 - Lag0038042.1 Lac2g1404 598668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1404 282 SMART tSNARE_6 185 252 IPR000727 -
Lac2g1404 282 CDD SNARE_NTD_AtSYP61-like 41 138 - -
Lac2g1404 282 ProSitePatterns Syntaxin / epimorphin family signature. 196 235 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lac2g1404 282 PANTHER SYNTAXIN 44 271 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac2g1404 282 FunFam syntaxin-61 isoform X1 193 254 - -
Lac2g1404 282 Pfam SNARE domain 227 278 IPR000727 -
Lac2g1404 282 CDD SNARE_Qc 193 250 - -
Lac2g1404 282 FunFam Syntaxin 10 39 141 - -
Lac2g1404 282 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 190 252 IPR000727 -
Lac2g1404 282 Pfam Syntaxin 6, N-terminal 42 135 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Lac2g1404 282 Gene3D - 197 261 - -
Lac2g1404 282 SUPERFAMILY SNARE fusion complex 189 252 - -
Lac2g1404 282 Coils Coil 228 248 - -
Lac2g1404 282 Gene3D - 38 140 - -
Lac2g1404 282 SUPERFAMILY t-snare proteins 41 136 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1404 K08500 - csv:101212527 404.445