Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1416 ATGGACTGGATCAGAGGCCCTGCCGTCGGCCGCGGCTCGTCGGCCACCGTCTATTTGGCTACAACCACCTCCTCCGCCCACCAATTCGCCGTCAAGTCCGGCCACCAATTCGCCGTCAAGTCCTCCGACCTCTCTTCATCGGTGCTGTTGCAGAAGGAACACGCTCTTCTCTCCAATTTGAACTCCCCATACCTAATCAACTGCCTAGGTTTCGATGTTGAAATTGAAAGCTCCAAGCCGCCGGTGTTCAATCTGTTCATGGAGTATCTGCCGGAGGGGACGCTGTGGGACGCGATTCAGAGCAACGGAGGCCGGATGGAGGAATCGACGATCGGAGCGTATTCGCGCCAGATTCTCAAAGGATTGGAGTATCTTCACGCGAATGGATTGGCGCATTGCGATATCAAGAGCCGGAATCTGTTGTTGAGTGGTGAGGGTTTGAAAATCGCCGATCTAGGCTGTGCGAAATTTGTTGACGGAGGAGTTTGCGGGAATGGAGTTGGGGCCTTTTCTGGTTCGCCGGCGTTTATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTACCGGCGGATGTTTGGGCGTTTGGATGTACGGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAGATGGAGGATCCGGTTTCGGCGTTGTATAGGATTGGGTTCTCCGGCGATTCGCCGGAGGTTCCGCGGTGGCTGTCGGAGAGGGCGAGGGATTTTGTCTCCAAGTGTTTGATAAAAGACCCGGAAGAACGATGGACTGCGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTAAATCGGAAATTGAATGCTCGAGGATGAAGACGATGGGTTCTTCTCCGAGCTGTGTTTTGGATCGAAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGCTAACCCATCAAGCTTCTTCGGCCGATTCTGCGGCTGAGAGGATTAGACAATTGGCTGGAAATTTGTCTTCCGATTGCGATTGGGAAGGGGATGATCGAGATTGGATCTTGATCAGAAACAATGGAGTGGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTCTGCTACAGTTGAAGAAGAAGAAGAAAAAGAAGAGATGGAAATTTTGAACTTGGAATTTGTTGAAGATTTTGTGACATTCTGTTTAAGTGATGATGATTTTAGTATTAAAACGGGAGGGGAACAAGGAAGTAGGAGAAGAGAGTCGATAATTCAGTTCGGGTCCTTCAGTGGCGAAGAGAGGTATAAATACCTGCTCATGCTCCTAGGGTTTTTTAGGAGTTCGGAGGCGTTTTGGGACAAACCAAGTGGATCCGGGGCGGCTAGAGGCTACAGGGACCAAACGGGGCCCGACCCCTTCGGTCTCGACCCGTCCCGCCTGCCGGTTTCGCCTCTTGGGTCCATCTTTTGGTCTAATTTCTGCCCGATTGTCCTTGTCAGCTCCTTGCGCATCGGGGTGGTCTAA 1500 51.53 MDWIRGPAVGRGSSATVYLATTTSSAHQFAVKSGHQFAVKSSDLSSSVLLQKEHALLSNLNSPYLINCLGFDVEIESSKPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGAYSRQILKGLEYLHANGLAHCDIKSRNLLLSGEGLKIADLGCAKFVDGGVCGNGVGAFSGSPAFMAPEVARGEEQGLPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGDSPEVPRWLSERARDFVSKCLIKDPEERWTAKRLLEHPFLQGFDSKSEIECSRMKTMGSSPSCVLDRSFWDSMEDLETPLKLTHQASSADSAAERIRQLAGNLSSDCDWEGDDRDWILIRNNGVGGGSHGNGSVSSDISATVEEEEEKEEMEILNLEFVEDFVTFCLSDDDFSIKTGGEQGSRRRESIIQFGSFSGEERYKYLLMLLGFFRSSEAFWDKPSGSGAARGYRDQTGPDPFGLDPSRLPVSPLGSIFWSNFCPIVLVSSLRIGVV 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11999441 12005265 - Lag0038054.1 Lac2g1416 598680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1416 499 Gene3D Transferase(Phosphotransferase) domain 1 5 327 - -
Lac2g1416 499 Pfam Protein kinase domain 7 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1416 499 CDD STKc_MAPKKK 2 267 - -
Lac2g1416 499 SMART serkin_6 3 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1416 499 ProSitePatterns Protein kinases ATP-binding region signature. 9 40 IPR017441 GO:0005524(InterPro)
Lac2g1416 499 SUPERFAMILY Protein kinase-like (PK-like) 3 313 IPR011009 -
Lac2g1416 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1416 499 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 268 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac2g1416 499 ProSiteProfiles Protein kinase domain profile. 3 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0574 Lac-Chr12:6100365 Lac2g1416 Lac-Chr2:11999441 1.80E-88 dispersed
Lac2g1416 Lac-Chr2:11999441 Lac9g2041 Lac-Chr9:40031485 6.10E-83 dispersed
Lac7g1902 Lac-Chr7:27803619 Lac2g1416 Lac-Chr2:11999441 4.60E-34 transposed
Lac1g3195 Lac-Chr1:52052585 Lac2g1416 Lac-Chr2:11999441 4.50E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86024 PF00069 Pkinase 3.80E-52 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1416 K20716 - csv:101205426 584.719