Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g1416 | ATGGACTGGATCAGAGGCCCTGCCGTCGGCCGCGGCTCGTCGGCCACCGTCTATTTGGCTACAACCACCTCCTCCGCCCACCAATTCGCCGTCAAGTCCGGCCACCAATTCGCCGTCAAGTCCTCCGACCTCTCTTCATCGGTGCTGTTGCAGAAGGAACACGCTCTTCTCTCCAATTTGAACTCCCCATACCTAATCAACTGCCTAGGTTTCGATGTTGAAATTGAAAGCTCCAAGCCGCCGGTGTTCAATCTGTTCATGGAGTATCTGCCGGAGGGGACGCTGTGGGACGCGATTCAGAGCAACGGAGGCCGGATGGAGGAATCGACGATCGGAGCGTATTCGCGCCAGATTCTCAAAGGATTGGAGTATCTTCACGCGAATGGATTGGCGCATTGCGATATCAAGAGCCGGAATCTGTTGTTGAGTGGTGAGGGTTTGAAAATCGCCGATCTAGGCTGTGCGAAATTTGTTGACGGAGGAGTTTGCGGGAATGGAGTTGGGGCCTTTTCTGGTTCGCCGGCGTTTATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTACCGGCGGATGTTTGGGCGTTTGGATGTACGGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAGATGGAGGATCCGGTTTCGGCGTTGTATAGGATTGGGTTCTCCGGCGATTCGCCGGAGGTTCCGCGGTGGCTGTCGGAGAGGGCGAGGGATTTTGTCTCCAAGTGTTTGATAAAAGACCCGGAAGAACGATGGACTGCGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTAAATCGGAAATTGAATGCTCGAGGATGAAGACGATGGGTTCTTCTCCGAGCTGTGTTTTGGATCGAAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGCTAACCCATCAAGCTTCTTCGGCCGATTCTGCGGCTGAGAGGATTAGACAATTGGCTGGAAATTTGTCTTCCGATTGCGATTGGGAAGGGGATGATCGAGATTGGATCTTGATCAGAAACAATGGAGTGGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCAGATATTTCTGCTACAGTTGAAGAAGAAGAAGAAAAAGAAGAGATGGAAATTTTGAACTTGGAATTTGTTGAAGATTTTGTGACATTCTGTTTAAGTGATGATGATTTTAGTATTAAAACGGGAGGGGAACAAGGAAGTAGGAGAAGAGAGTCGATAATTCAGTTCGGGTCCTTCAGTGGCGAAGAGAGGTATAAATACCTGCTCATGCTCCTAGGGTTTTTTAGGAGTTCGGAGGCGTTTTGGGACAAACCAAGTGGATCCGGGGCGGCTAGAGGCTACAGGGACCAAACGGGGCCCGACCCCTTCGGTCTCGACCCGTCCCGCCTGCCGGTTTCGCCTCTTGGGTCCATCTTTTGGTCTAATTTCTGCCCGATTGTCCTTGTCAGCTCCTTGCGCATCGGGGTGGTCTAA | 1500 | 51.53 | MDWIRGPAVGRGSSATVYLATTTSSAHQFAVKSGHQFAVKSSDLSSSVLLQKEHALLSNLNSPYLINCLGFDVEIESSKPPVFNLFMEYLPEGTLWDAIQSNGGRMEESTIGAYSRQILKGLEYLHANGLAHCDIKSRNLLLSGEGLKIADLGCAKFVDGGVCGNGVGAFSGSPAFMAPEVARGEEQGLPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGDSPEVPRWLSERARDFVSKCLIKDPEERWTAKRLLEHPFLQGFDSKSEIECSRMKTMGSSPSCVLDRSFWDSMEDLETPLKLTHQASSADSAAERIRQLAGNLSSDCDWEGDDRDWILIRNNGVGGGSHGNGSVSSDISATVEEEEEKEEMEILNLEFVEDFVTFCLSDDDFSIKTGGEQGSRRRESIIQFGSFSGEERYKYLLMLLGFFRSSEAFWDKPSGSGAARGYRDQTGPDPFGLDPSRLPVSPLGSIFWSNFCPIVLVSSLRIGVV | 499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 11999441 | 12005265 | - | Lag0038054.1 | Lac2g1416 | 598680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g1416 | 499 | Gene3D | Transferase(Phosphotransferase) domain 1 | 5 | 327 | - | - | |
Lac2g1416 | 499 | Pfam | Protein kinase domain | 7 | 267 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g1416 | 499 | CDD | STKc_MAPKKK | 2 | 267 | - | - | |
Lac2g1416 | 499 | SMART | serkin_6 | 3 | 267 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g1416 | 499 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 40 | IPR017441 | GO:0005524(InterPro) | |
Lac2g1416 | 499 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 313 | IPR011009 | - | |
Lac2g1416 | 499 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g1416 | 499 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 268 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lac2g1416 | 499 | ProSiteProfiles | Protein kinase domain profile. | 3 | 267 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0574 | Lac-Chr12:6100365 | Lac2g1416 | Lac-Chr2:11999441 | 1.80E-88 | dispersed | |
Lac2g1416 | Lac-Chr2:11999441 | Lac9g2041 | Lac-Chr9:40031485 | 6.10E-83 | dispersed | |
Lac7g1902 | Lac-Chr7:27803619 | Lac2g1416 | Lac-Chr2:11999441 | 4.60E-34 | transposed | |
Lac1g3195 | Lac-Chr1:52052585 | Lac2g1416 | Lac-Chr2:11999441 | 4.50E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86024 | PF00069 | Pkinase | 3.80E-52 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g1416 | K20716 | - | csv:101205426 | 584.719 |