Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1539 ATGATTCATTCTGGTTTCTTCCTTGCGGGTCCTTCATTTAATTCTGATGCTACTACTTCTTTCATATCAACTCCGGTGTCTGGAGAAGATGGCGCTACAGCTGATGATATTAGAAACTATACGTCTGATTCCCTCCCCCCTTCTTTCTGGGTTCGAACGGCGATGAAAATATCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTCCACTACCAGAACGGATCGAGATCTGATCTTGGACCGAATCCTTTTAATTCGGGTTTGTGGATGGCGATGGAACTTGTCGCTCTGTTGTTTCAGCTAATCATCTCAGTGCTTACTCTTGCCATTTCACAAACTGAGAGGCCAGTCTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGCGTTCTCAGCTTACTGCTTCTCTATGGTCGCCATCGGTATCATAATCTAATACAGGGAGATGGTAACAGTCTTTTGGATATCGAACAGCAGAGGAACAATGATTCATCAAGGTACTCACATTTGATGAACAAATGCCGCACGTCTCTCGATCTTTTCTTCGCAATATGGTTTGTAATGGGAAATCTTTGGGTCTTCGACTCTCGCTTTGCCTCGTTCCAAAAAGCTCCCAAGCTACATCTACTATGCACCTTCTTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCACTGATTAGCAGTCTCATAGGATATAACATTAACATGGGATCTACTGAAAAAGGAGCGTTGGACGATCAAATTTCCCAGCTACCTTGCTGGAGATACAAAGCAGTCGAGGCCAACATCAACCCCGGAAATCAACCGGCTAATAACAATACAGGACTTCCAAAAGAGGATCCAGAATGTTGCATTTGCCTTGCCAAGTATATAGACAAGGAAGAAGTGAGACAGTTGCCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCATGCCCTCTCTTCACTTCCCAGGAAGACAAAGGTTTTGGTAACGTTTGGGCGAGTCAAAAAGTCAAGTTTTTGATTCCTGGTGCTGGGCTGCGACGGCAGATTAGCTCGGCTGCCGGTGTTTGGAATAAGGGAAGGTGCTTTTCAATGATCAGTTCTGGTTATTTCGTTTCGGGTCCGATGTGTAACTGCAGTGGCACTGCTTCCTATATCTCAAATTCGTTGGTGGAAGAAGATGGTGTAGGTGCGAATGTTAGAGATGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTAGGATGGCAATGGGAGTGTCTAGAGCCAGGTGGTTCATTTTCTTAAGAAGAGTATTTCACTACCAGAACGGATCGAGATCGGATCTCGGGTCTGATCCTTTCAATTCTAGCTCGTGGATGGCGATGGAGCTGGTAGCTATGGTGTTTCAGTTGGCCATCACCGTGTTTTTTCTTGCCATTTCAAAAACTGAGAAGCCAGTTTGGCCTATGAGACTCTGGATAGTTGGTTATGATCTTGGCTGCGTTCTTAGTTTGTTGCTTCTCTATGGGCGCTATTGGCATCTTTATTTAATGCGTGGCGACCGTGTCAGCCTTTCTGATACTGAGCAGCGGAGGAGCAGTCAAGCATCAAGGACCTTGCGTTTGATGAACAAATGTCGGTCATCCCTTGAACTCTTCTTTGCAATATGGTTTGTGATGGGTAATGTTTGGATCGTCGACTCTCGCTTCGGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGTTATGCGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCCTTTCCATTCATTCTTTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAACCTTCTAGGATATAACATTAACATGGCGTTAACCGACAAAGGAGCATCAGATGATCAAATTTCCCAGATACCATGCTGGAGATATAAAGCAAGCTCAAAGCAACCGGATAGCAACAAAGGACTTCCAAAAGAGGATCCAGAATGCTGCATTTGCCTTGTCAAGTACAGAGATGAAGAAGAAGTAAGACAGTTGCCTTGTTCCCATTTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATCACATCTTCCTGCCCTCTCTGTAAGCAACAACTTCAAAGATAG 2163 44.34 MIHSGFFLAGPSFNSDATTSFISTPVSGEDGATADDIRNYTSDSLPPSFWVRTAMKISRARWFIFLRRVFHYQNGSRSDLGPNPFNSGLWMAMELVALLFQLIISVLTLAISQTERPVWPMRLWIGGYDLGCVLSLLLLYGRHRYHNLIQGDGNSLLDIEQQRNNDSSRYSHLMNKCRTSLDLFFAIWFVMGNLWVFDSRFASFQKAPKLHLLCTFLLVWNAICYSFPFILFLLLCCCVPLISSLIGYNINMGSTEKGALDDQISQLPCWRYKAVEANINPGNQPANNNTGLPKEDPECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAITSSCPLFTSQEDKGFGNVWASQKVKFLIPGAGLRRQISSAAGVWNKGRCFSMISSGYFVSGPMCNCSGTASYISNSLVEEDGVGANVRDDNSVALPASFWVRMAMGVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELVAMVFQLAITVFFLAISKTEKPVWPMRLWIVGYDLGCVLSLLLLYGRYWHLYLMRGDRVSLSDTEQRRSSQASRTLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFGSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISNLLGYNINMALTDKGASDDQISQIPCWRYKASSKQPDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLAITSSCPLCKQQLQR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13361131 13368544 + Lag0038177.1 Lac2g1539 598803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1539 720 SMART ring_2 674 714 IPR001841 -
Lac2g1539 720 SMART ring_2 299 339 IPR001841 -
Lac2g1539 720 CDD RING-H2_RNF6-like 673 715 - -
Lac2g1539 720 ProSiteProfiles Zinc finger RING-type profile. 299 338 IPR001841 -
Lac2g1539 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 719 IPR013083 -
Lac2g1539 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 343 IPR013083 -
Lac2g1539 720 ProSiteProfiles Zinc finger RING-type profile. 674 715 IPR001841 -
Lac2g1539 720 SUPERFAMILY RING/U-box 294 338 - -
Lac2g1539 720 SUPERFAMILY RING/U-box 673 718 - -
Lac2g1539 720 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 342 - -
Lac2g1539 720 Pfam Ring finger domain 673 715 IPR001841 -
Lac2g1539 720 Pfam Ring finger domain 298 338 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1539 Lac-Chr2:13361131 Lac6g1234 Lac-Chr6:11986597 8.30E-49 dispersed
Lac2g1539 Lac-Chr2:13361131 Lac10g2365 Lac-Chr10:36392486 1.30E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1539 - - - 0.0