Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1546 ATGTTCTTAAGAAGAACAATGCTAATTAGGAATCTCCTTCTTCCTCCTCATTTCTTCACCATAGCCTTGATTTTATCTGTAAACTCCCTTCTCTTTTCTTCTTGTTATTCCATTGATGAACAGGGTAGAGCTCTTCTAACATGGAAGAATAATCTAACAAGCCCCACAGATGCTTTGAGTTCATGGAATCTCGAGGCCCCAACGCCATGTTCGTGGCTTGGAATTACCTGCGATCCGAACGGACAGGTGATACAGGTAGCCCTGAGATCAATGGATTTACATGGTACATTGCCTACAAACCTTCATGCTCTCAAGTTCTTGAGCATCTTTGTCGTCTCTGAGACGAATATTACGGGACCGATTCCGCAAGAGTTTGGAGATTATAGTGAGCTGACTGTTCTTGATCTCACCGAGAATTACCTTATGGGAAAAGTCCCAGAAGAGATTTGCAGGCTGAGCAAGCTGCAGGATTTGTCTCTTCATGGTAATGAGCTTGATGGGAATATACCTTCAGAGATTGGAAATCTTACAAACCTTGAGTATCTCCAGCTCTCTGATAACAACTTCATTGGTGAGATTCCAAAGAGCATTGGAATGTTGAAGAAGCTTTATCATTTCAAACTTGGAGGGAATAAATATATCAGTGGTATGTTGCCAATGGAGATTGGAAACTGCAGCAGTTTATCCTTCTTAGGCTTACCCGAAACCGGAGTCACCGGTCTTCCTTCATCGATTGGGATGATGACAAGCCTTCAGAGCATAGCCATCTATAACTCACAACTTTCCGGATCAATCCCAGAGGAGATTGGAAACTGTAGTGAGTTGCATACTATTTACATGTATAATAATAAGCTTTCCGGGCTGGTACCGAAAGGGATCGGAAAGCTGAGAAATCTTCGAAACCTTAATCTATGGATGAACAGATTGGAGGGTGGCATTCCAGAAGAAATTGGAAACTGCAAGGAACTCGTAGTCCTAGACATTTCGGACAATCGTCTAGATGGAAGCATACCAAAAAGTATTGGAGAGCTTTCAAATCTTCAAGAGCTTCAACTGAGTAATAATCAGATGACTGGTACACTACCTTCTGAAATCTCTAATTGTGTGTCTTTGGTTCACATGGAAATAGACAACAACAAAATTTCGGGCGAGATACCGGCTTCTATTGGCAACTTGAAGAACTTGAATTTATTTTACGCCTGGCAGAACAAACTTACAGGCAGTATTCCCAACACCATCTCAGCCTGCCTGACTCTCCAGTCTCTTGATCTCTCTTTCAATCAACTGTCCGGTGAGTTACCGAAAGAGATGTTCACGTTGCAAAATCTCACCAAAGTTCTTCTGATGTCAAACAATCTGTCCGGGATCATTCCACTTGAGATAGAAAACTGTACGAATCTATCCAGGTTAAGACTAGCTACAAATAGGATTGGAGGTACTATTCCATCAGAGATTGGGAATCTGAAGAGCTTAACTTTTCTAGACATAGCTGAAAACCTTCTTGTTGGAGGAATTCCTCCATCGTTAGCGAGAAGCGATTGTCTTCAGTTACTCGATCTCCATTCGAATGGGCTGACGAGTCCTCTTCCAGATGATCTGCCAAAGAAACTACAGGTTTTGGATATGTCCAACAACAGGCTTACTGGTCAGGTCAATCCCAGCATAGGAGGATTGACGAACCTAACAAAACTCGTCCTCAGAAACAACCAACTTTCAGGGAAAATCCCTGGAGAAATCATTTCCTGCAAGAAGCTCCAGTCTTTAGATCTTAGCAACAACCGCTTCTCTGGGGAACTCCCAAAGGAATTGGGTCAAATTGAATCACTTGAAATTTCTCTTAATCTAAGTTGCAATCAATTTTTAGGTGAAATCCCATTCGAATTCTCTAGTCTCACCAAGCTAGGAATGCTAGACCTCTCCCACAACAACCTCTCTGGGAACCTTAGCCATCTTGTACAGCTTGAAAACCTCGTGTCTCTAAACATCTCCCACAACAACTTCTCCGGCAAATTGCCCGACACCATGTTCTTTCAAAAGCTCCCTCTACATGACATTGCCGGAAACAAAGACCTCTACATTACAAATGACCTAGTAACTATTACAAACAAGTTGATATCCAACAGATGCAGAGATGTAATAAAGTTTGGCTTACCAATCCTGATCAGCATAAGTGCAGTCTTGTTCTTTCTAGCAATCTACATGCTGATCCGCACACACATGGCCAATTCAATCCCCCTCACAGAAGACGAAAAATGGGAAATAACCATGTTTCAAAAGCTTGAGTTTTCGATCGAGGACATCCTCCACAACTTATCTTCATCCAACGTGATCGGCGCCGGAAGCTCCGGTGTCGTGTACAGAGTCACAACCCCAAATGGGGGAAATATGGCAGTGAAGAAAATATGGGCAACAGAAGAGACTGGAGCCTTCAACACTGAAATCCAAACTTTGGGATCAATTCGACACAAGAACATAATCAGGCTACTGGGTTGGGGAACCAACAGGAATTCGAAGCTCCTGTTTTATGATTACCTCCCAAATGGAAGCTTGAGCTCCCTTATCCATGGAGATGGAGAAGGAGAAGCAGAATGGGAGGTCAGATACGAAGCCCTTCTAGGAGTGGCTCATGCTCTTGCATATCTCCACCATGATTGTGCTCCAGCAATCTCACATGGCGATGTTAAATCCATGAACGTCCTGCTCGGCCATAACTTTGAACCATACCTAGCCGACTTTGGGCTAGCCAAAAACGTCGGTACAAACAGCGAAGATATTGGTTCAGAGCAGCCATCGCTGAGACCTCAGCTTGCTGGCTCTTTCGGCTACATGGCCCCTGGTATGTTCATTTCTCTCCCCCTTTCCAAACCCATTTCTAGATTTTGGCAAATGGAAGCCATGAATTCGAAACTAAGCATTTTCTTCATGATTTCAGAACAAGGGTTGATGACGAGAGTCACAGAGAAGAGCGATGTGTACAGCTTTGGAGTAATGATAATGGAGGTTTTAACAGGGCGGCACCCACTGGACCCGACTTTGCCTGGAGAAGCTAATTTGGTGCAATGGGTTCAAGAGCATTTGGCCACAAGTAAAATCCCAGTCGCCATTTTCGATTCGAATCTCAAAGGAAGAACCGATCCCATAATGCATGAAATGCTTCAAACCCTAGCCGTCGCATCGATCTGTGTCAGCGTGAAGCCCGACGATCGACCCGCTATGAAAGATGTCGTCGCGATGCTCGAGGAGATTCGACATGTCGAATCGGGAAGAACCGCCGCTGACAACCCGAAGCTAGGAAAGGTGGTGGTGGTGGTTCAGTCTCCACCGCCATCGCCGCCACCGGAGAAGTTTTTATCTTATGATTCAAGCTGA 3369 44.23 MFLRRTMLIRNLLLPPHFFTIALILSVNSLLFSSCYSIDEQGRALLTWKNNLTSPTDALSSWNLEAPTPCSWLGITCDPNGQVIQVALRSMDLHGTLPTNLHALKFLSIFVVSETNITGPIPQEFGDYSELTVLDLTENYLMGKVPEEICRLSKLQDLSLHGNELDGNIPSEIGNLTNLEYLQLSDNNFIGEIPKSIGMLKKLYHFKLGGNKYISGMLPMEIGNCSSLSFLGLPETGVTGLPSSIGMMTSLQSIAIYNSQLSGSIPEEIGNCSELHTIYMYNNKLSGLVPKGIGKLRNLRNLNLWMNRLEGGIPEEIGNCKELVVLDISDNRLDGSIPKSIGELSNLQELQLSNNQMTGTLPSEISNCVSLVHMEIDNNKISGEIPASIGNLKNLNLFYAWQNKLTGSIPNTISACLTLQSLDLSFNQLSGELPKEMFTLQNLTKVLLMSNNLSGIIPLEIENCTNLSRLRLATNRIGGTIPSEIGNLKSLTFLDIAENLLVGGIPPSLARSDCLQLLDLHSNGLTSPLPDDLPKKLQVLDMSNNRLTGQVNPSIGGLTNLTKLVLRNNQLSGKIPGEIISCKKLQSLDLSNNRFSGELPKELGQIESLEISLNLSCNQFLGEIPFEFSSLTKLGMLDLSHNNLSGNLSHLVQLENLVSLNISHNNFSGKLPDTMFFQKLPLHDIAGNKDLYITNDLVTITNKLISNRCRDVIKFGLPILISISAVLFFLAIYMLIRTHMANSIPLTEDEKWEITMFQKLEFSIEDILHNLSSSNVIGAGSSGVVYRVTTPNGGNMAVKKIWATEETGAFNTEIQTLGSIRHKNIIRLLGWGTNRNSKLLFYDYLPNGSLSSLIHGDGEGEAEWEVRYEALLGVAHALAYLHHDCAPAISHGDVKSMNVLLGHNFEPYLADFGLAKNVGTNSEDIGSEQPSLRPQLAGSFGYMAPGMFISLPLSKPISRFWQMEAMNSKLSIFFMISEQGLMTRVTEKSDVYSFGVMIMEVLTGRHPLDPTLPGEANLVQWVQEHLATSKIPVAIFDSNLKGRTDPIMHEMLQTLAVASICVSVKPDDRPAMKDVVAMLEEIRHVESGRTAADNPKLGKVVVVVQSPPPSPPPEKFLSYDSS 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13426534 13429902 + Lag0038184.1 Lac2g1546 598810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1546 1122 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 434 529 - -
Lac2g1546 1122 SUPERFAMILY L domain-like 37 290 - -
Lac2g1546 1122 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 741 844 - -
Lac2g1546 1122 ProSiteProfiles Protein kinase domain profile. 771 1082 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1546 1122 Gene3D Transferase(Phosphotransferase) domain 1 845 1101 - -
Lac2g1546 1122 Gene3D Phosphorylase Kinase; domain 1 743 844 - -
Lac2g1546 1122 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 311 1081 - -
Lac2g1546 1122 FunFam Putative LRR receptor-like serine/threonine-protein kinase 612 696 - -
Lac2g1546 1122 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 FunFam Nuclear pore complex protein NUP107 38 189 - -
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 148 240 IPR032675 -
Lac2g1546 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1546 1122 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 431 - -
Lac2g1546 1122 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 656 674 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 612 631 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 131 152 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 419 438 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 178 199 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine Rich Repeat 466 488 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 PRINTS Leucine-rich repeat signature 419 432 - -
Lac2g1546 1122 PRINTS Leucine-rich repeat signature 631 644 - -
Lac2g1546 1122 SMART serkin_6 771 1079 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1546 1122 SMART LRR_sd22_2 152 178 - -
Lac2g1546 1122 SMART LRR_sd22_2 631 650 - -
Lac2g1546 1122 SMART LRR_sd22_2 534 560 - -
Lac2g1546 1122 SMART LRR_sd22_2 320 346 - -
Lac2g1546 1122 Pfam Protein kinase domain 774 1076 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1546 1122 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 241 336 IPR032675 -
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 612 697 IPR032675 -
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 434 533 IPR032675 -
Lac2g1546 1122 SUPERFAMILY Protein kinase-like (PK-like) 755 1082 IPR011009 -
Lac2g1546 1122 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Lac2g1546 1122 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 532 611 - -
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 40 147 IPR032675 -
Lac2g1546 1122 SMART LRR_typ_2 583 606 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 488 512 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 176 200 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 152 175 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 558 582 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 654 678 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 344 368 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 296 320 IPR003591 -
Lac2g1546 1122 SMART LRR_typ_2 417 440 IPR003591 -
Lac2g1546 1122 Pfam Leucine rich repeat 536 595 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515(InterPro)
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 534 611 IPR032675 -
Lac2g1546 1122 Gene3D Ribonuclease Inhibitor 337 433 IPR032675 -
Lac2g1546 1122 SUPERFAMILY RNI-like 289 666 - -
Lac2g1546 1122 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1546 Lac-Chr2:13426534 Lac2g1785 Lac-Chr2:17110849 2.30E-85 dispersed
Lac2g1546 Lac-Chr2:13426534 Lac3g0165 Lac-Chr3:1159624 8.90E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86026 PF00069 Pkinase 1.30E-29 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1546 - - - 0.0