Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1554 ATGGCCGACGAATACCCCGATAAGAACATCCTCCAGAGCACTGCTCTTCTCAAGTATATACTGGAAGCCAACGCCTATCCAAGAGAGCATCAACAGTTGAAGGAAATCAGAGAAACCACCCACCAGAACTTCGCCAAGCCAAAGAAAGTGATCGGTGTACCGCCGGATCAAGGATTGTTTCTATCCATGCTTTTGAAACTGATGAACGCAAAGAAAACTATAGAGCTCGGCGTATTCACTGGCTATTCTCTCCTCACCACTGCGCTTGCATTGCCCTCTGACGGCCAGATAACAGCCATTGATATGAATAGAGAATCATTCGAAATTGGTTTGCCATTTATCAAGAAGGCAGGAGTTGATCATAAAATCAATTTTGTGGAATCTCTAGCATTGGTTGCCCTGAATGACCTCCTCAATGATGGAAGAGAAGGAGAATTTGATTTTGCATTTGTAGATGCCAACAAATCAGAGTTCATAAAATATCACGAGTTGCTTATAAAATTAGTGAAGGTTGGTGGAGTAATTGCCTATGATAACACCCTGTGGTATGGAACGGTGGTGCTGAGGGACGATTTTATCCATGAGGATTATAAAGCTAATGCAACTCATATACGAGAGCTTAATGCTTTTCTAGTCAATGACTCACGTGTGGAGATCTCTCATCTCTATTGGAGATGGTCTCACTCTATGCAGACGCAGAAAACGGACTGGGAGATAGGCCTAAGAGATGAAACCGACAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGCGTTTGGCCCGACCCCCTGCTCGGCCTCCGTTTGATCCCCACCGCTTCTGGCTGCCCCAGTTCGGCCTGGTTTGTCCCAAAACGCTTCCGAATTCCTAAAAAGCCTAGGAACATGAACATGTATTTATACCCCTCTTCGCTACTGAAGAAGGGGACCCGAACTCTCTACTCTCTAGCCCTCCTACCTCCGTTTTCTGACTTAAGCATCGGAGTCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTTGCAGGCCACGTCTTCCCCCGCTCACAAACAAATTCACTGCGATTATCACGTGGAGCGAAGGCCGAGGAGTCGAGGCCGAGGTCGAGGAGAGGATGTTGACTCCAAAATTGTCGCCCTTGAGGATGAGGTGAAGGGAATGAACCGGAGTTTATCTAGAATACTTCGAATGCTGGATAAACCAGGCCCTAGCACCAAACTCCATGAGGAAGGCTTGATTAGAGACCCGAAAAGGGGAAGGAGCCAGTCGAATACGTGGATAAATCAGAGACAAAGTCAAAGGGAAGAAGACCAACAACATGACCAGCGAGAAGTGCGAAAATGCCGAGGTCGAGGCCAGCGCAGCCAAAGCCGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGACCGAGGCCAAAAAGACAATCTTCCTAGGAAGACCGAGCTTCTAGACACCCAAAAGAACTGGGAAATCCTCAGGGAGACCTGCGAAGTCGAAGGACCCTGGAGCACAAGACATGGAAGAACTAATCGACAAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGATCAGCCAGACATTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGTTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACAGTCAAACAACGGCCAGGTGAGAGCTTGCGAGATTACATAACGCGTTTTAACGACGAAGCACTACATGTTGAGAGATACAGTGAGGGAGCGACCCTAGTAGCCATCACAGCCGGACTGGAAGACGAAAGCTACTCAACTCAATAG 1854 48.87 MADEYPDKNILQSTALLKYILEANAYPREHQQLKEIRETTHQNFAKPKKVIGVPPDQGLFLSMLLKLMNAKKTIELGVFTGYSLLTTALALPSDGQITAIDMNRESFEIGLPFIKKAGVDHKINFVESLALVALNDLLNDGREGEFDFAFVDANKSEFIKYHELLIKLVKVGGVIAYDNTLWYGTVVLRDDFIHEDYKANATHIRELNAFLVNDSRVEISHLYWRWSHSMQTQKTDWEIGLRDETDKWDGPRPKGSGVWPDPLLGLRLIPTASGCPSSAWFVPKRFRIPKKPRNMNMYLYPSSLLKKGTRTLYSLALLPPFSDLSIGVGVASTTPVCRFSLLQATSSPAHKQIHCDYHVERRPRSRGRGRGEDVDSKIVALEDEVKGMNRSLSRILRMLDKPGPSTKLHEEGLIRDPKRGRSQSNTWINQRQSQREEDQQHDQREVRKCRGRGQRSQSRSQGCRGRGQSSRDRGQKDNLPRKTELLDTQKNWEILRETCEVEGPWSTRHGRTNRQSRPTLHRRSHERSARHWFERLKRRSISCFKDLARAFLAQFMGAREQRKPHINLLTVKQRPGESLRDYITRFNDEALHVERYSEGATLVAITAGLEDESYSTQ 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13557880 13565660 + Lag0038192.1 Lac2g1554 598818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1554 617 CDD AdoMet_MTases 74 177 - -
Lac2g1554 617 MobiDBLite consensus disorder prediction 403 418 - -
Lac2g1554 617 Pfam O-methyltransferase 25 222 IPR002935 GO:0008171(InterPro)
Lac2g1554 617 Pfam Retrotransposon gag protein 528 610 IPR005162 -
Lac2g1554 617 MobiDBLite consensus disorder prediction 504 528 - -
Lac2g1554 617 MobiDBLite consensus disorder prediction 398 485 - -
Lac2g1554 617 Gene3D Vaccinia Virus protein VP39 2 227 IPR029063 -
Lac2g1554 617 MobiDBLite consensus disorder prediction 434 452 - -
Lac2g1554 617 MobiDBLite consensus disorder prediction 419 433 - -
Lac2g1554 617 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 17 224 IPR029063 -
Lac2g1554 617 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 9 236 IPR002935 GO:0008171(InterPro)
Lac2g1554 617 PANTHER O-METHYLTRANSFERASE-RELATED 7 222 IPR050362 GO:0008757(PANTHER)
Lac2g1554 617 MobiDBLite consensus disorder prediction 469 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1554 Lac-Chr2:13557880 Lac13g1016 Lac-Chr13:8584167 1.60E-69 dispersed
Lac5g2365 Lac-Chr5:42299511 Lac2g1554 Lac-Chr2:13557880 1.00E-30 dispersed
Lac13g0058 Lac-Chr13:410730 Lac2g1554 Lac-Chr2:13557880 4.90E-103 transposed
Lac12g1733 Lac-Chr12:33205611 Lac2g1554 Lac-Chr2:13557880 1.10E-12 wgd
Lac2g1554 Lac-Chr2:13557880 Lac4g0186 Lac-Chr4:3311381 1.70E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1554 K00588 - csv:101212121 314.309