Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1611 ATGCCTTTTTCACTGTGGATGTCAGCATGCTTCTTCATGAGCTTGCTGATATCGGCTGCCATGGCCGACGACGAACTCGACCGGTCATCGGCCATCGCCTTGCCGGACTGCTCGTACCGATGCGGCGAAGTGGAGATTCCATTCCCATTTGGACTCACCCCGGAATGCTCCCTCAATGATGCATTTCTCGTCACTTGCAACGACTCGTTTAATCCCAACAAGCCGTTCGTCGGCGACGTTCCGATCACGAGTTTTTCGGTGGAAGATGGCGATCTGGTGATCGAAAATCTCGTGGCGAACTATTGTTTCGACGCTGATGGAAACGTCTCCGGTCGCAACCAGACGTCTCTCGAGTCGAGCCGGTTCACCATCTCGACGAAGAACATCTTCACCGTCGTCGGGTGCAGCACCGTCGCGATGATCGGCGGCATCCTCCAAGACGACGAGAATTACTTGTCGGGGTGTGCAGCGTTCTGCAGTAGCTACCGGAACATGCCGAACGGATCGTGCTCCGGCGTCGGGTGCTGCCAGATGGCGATTCCCGGCGGACTGAAACAGATGAATCTGACGGTGGCGGGAGGGGAACGGACGAACGGGTCGGATATTTATTCGTGTGGGTACAGCTTCGTGGTGGAGGAGGCAGAGTTCAAGTTCTCGTCGGCGTATGTTCCACACTTTCCGAACGCGACGGTGCCGATGGTGTTGGACTGGTCCGTCGGCGACGAGCCGTGTAAGGACGCTGTGGGTGGCGAGAGGTATGCGTGCCAAGGGAATAGCAGCTGCCGCGACGCTGACTCCATGCGGGGTTATCGCTGCGAGTGCTTGGATGGCTTCGCCGGGAATCCGTATTTGCCACATAGTGGTTGCCAAGACATCAATGAATGTGATGATCGTAATAAGAATGAGTGTACGGATAAATGTATAAATACGATAGGAGGTTATGAATGTAGATGTCCAAAGGGGCACTCCGGCGATGGGAGAAAGAACGGCAGTGGCTGTGCTCGCCGCCGTGGGTTTCATGTTCTCCTATTAGTTTTTGGTATCGCTCTCGGCGTAATGGTCCTACTGGTAAGTTCTTCCTGGTTCTACATCGGCTTCAAGAAATGGAAGCTCATAAAACTCAAAGAAAATTTCTTCGAACGAAACGGCGGATTAATGTTAGAGCAACAGCTTTCAATCCGAGACGAAGCCGCACAAACCGCAAAGATCTTCACGGCAGAGGAATTACAGAAAGCCACAAACAACTACTCCGACGACCGAATCGTCGGCAAGGGCGGCTTCGGAACCGTCTACAAAGGCATCCTCCCAACCGGCGCCGCCGTCGCCATCAAGAAATCCAAGATCGTCGACAAAACTCAGAACAAACAGTTCATCAACGAAGTCGTCGTCCTCTCGCAGATCAACCACCGAAACGCAGTCAAACTCTTAGGCTGTTGTTTGGAAGAAGAAGTTCCTCTTCTCGTCTACGAATTCGTCTCGAACGGTACGCTCTTCGATCACATCCACCGGAGAAAATCGCAGCGGCCGATTCCTTGGAAGATCCGCCTGAAAATCGCGTCGGAAACCGCCAGCGTTCTCTCGTATCTGCACTCGTCGGCGACGATTCCGATCATTCACAGAGATGTGAAGTCGACGAACATTCTGCTCGACGAAAATTTCACCGCGAAGGTCTCCGATTTCGGTGCTTCGAAGTTAGTCCCCTTGGATCAGGTCGATTTGAACACGATCGTGCAAGGAACTCTCGGATACCTGGATCCAGAGTATCTGCAAACCAGTCAATTGACGGAGAAGAGCGACGTGTACAGTTTTGGCGTCGTTCTCGTGGAATTGATGACCGGAAAACCTCCTCTGTCGTTCAGCCGATCGGAGGAAGAACGGAATCTATCGATGTACTTTTTAATTGCTATGAAACAGAATCGGCTTACAGAAATTTTGGACAGAAATCTGGGAAGCGATGTGGATTTTGAGCAATTGAAAGAAGTTGCGAGCCTTGCGAAGAGGTGTTTGAGAGTGAAGGGGGAAGAAAGGCCGACGATGAAGGAGGTTGCTGCAGAGCTTGAAGGATTGTTTCAAATGGCGTTTGGTCATCCATGGATTGTTGATGATAAATCTTCGTCTGTTGAAGAAACAGAACTTTTGGTTAGTGAAGAAAAGGAAAAGGAAGCTCATGTTCTTTCTGTTCGTCGTGACGTTGAAACTGAAACTGAATGTACGGACAATGGGAGTAATCGATATGATAGTTTTCCCGCTAACCAAATTATACCAAAAGCAAATTCCGGGAGGTAA 2286 50.92 MPFSLWMSACFFMSLLISAAMADDELDRSSAIALPDCSYRCGEVEIPFPFGLTPECSLNDAFLVTCNDSFNPNKPFVGDVPITSFSVEDGDLVIENLVANYCFDADGNVSGRNQTSLESSRFTISTKNIFTVVGCSTVAMIGGILQDDENYLSGCAAFCSSYRNMPNGSCSGVGCCQMAIPGGLKQMNLTVAGGERTNGSDIYSCGYSFVVEEAEFKFSSAYVPHFPNATVPMVLDWSVGDEPCKDAVGGERYACQGNSSCRDADSMRGYRCECLDGFAGNPYLPHSGCQDINECDDRNKNECTDKCINTIGGYECRCPKGHSGDGRKNGSGCARRRGFHVLLLVFGIALGVMVLLVSSSWFYIGFKKWKLIKLKENFFERNGGLMLEQQLSIRDEAAQTAKIFTAEELQKATNNYSDDRIVGKGGFGTVYKGILPTGAAVAIKKSKIVDKTQNKQFINEVVVLSQINHRNAVKLLGCCLEEEVPLLVYEFVSNGTLFDHIHRRKSQRPIPWKIRLKIASETASVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQVDLNTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKPPLSFSRSEEERNLSMYFLIAMKQNRLTEILDRNLGSDVDFEQLKEVASLAKRCLRVKGEERPTMKEVAAELEGLFQMAFGHPWIVDDKSSSVEETELLVSEEKEKEAHVLSVRRDVETETECTDNGSNRYDSFPANQIIPKANSGR 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14301405 14306330 - Lag0038249.1 Lac2g1611 598875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1611 761 Gene3D Laminin 294 335 - -
Lac2g1611 761 ProSiteProfiles EGF-like domain profile. 291 325 IPR000742 -
Lac2g1611 761 SUPERFAMILY Protein kinase-like (PK-like) 401 691 IPR011009 -
Lac2g1611 761 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524(InterPro)
Lac2g1611 761 Pfam Calcium-binding EGF domain 291 326 IPR049883 -
Lac2g1611 761 CDD EGF_CA 291 325 - -
Lac2g1611 761 MobiDBLite consensus disorder prediction 740 761 - -
Lac2g1611 761 Pfam Protein kinase domain 416 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1611 761 FunFam Fibrillin 2 286 329 - -
Lac2g1611 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1611 761 Gene3D Transferase(Phosphotransferase) domain 1 492 696 - -
Lac2g1611 761 ProSitePatterns Calcium-binding EGF-like domain signature. 291 316 IPR018097 GO:0005509(InterPro)
Lac2g1611 761 MobiDBLite consensus disorder prediction 724 761 - -
Lac2g1611 761 SUPERFAMILY EGF/Laminin 290 326 - -
Lac2g1611 761 CDD STKc_IRAK 422 689 - -
Lac2g1611 761 Gene3D Laminin 252 293 - -
Lac2g1611 761 SMART egfca_6 291 334 IPR001881 GO:0005509(InterPro)
Lac2g1611 761 Gene3D Phosphorylase Kinase; domain 1 384 491 - -
Lac2g1611 761 MobiDBLite consensus disorder prediction 724 739 - -
Lac2g1611 761 FunFam Wall-associated receptor kinase 2 492 710 - -
Lac2g1611 761 SMART serkin_6 416 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1611 761 FunFam Wall-associated receptor kinase 2 386 491 - -
Lac2g1611 761 ProSiteProfiles Protein kinase domain profile. 416 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1611 761 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Lac2g1611 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 690 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Lac2g1611 761 SMART egf_5 294 334 IPR000742 -
Lac2g1611 761 SMART egf_5 243 290 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1611 Lac-Chr2:14301405 Lac8g1770 Lac-Chr8:35886736 2.80E-204 dispersed
Lac2g1611 Lac-Chr2:14301405 Lac2g1615 Lac-Chr2:14347267 1.70E-60 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86027 PF00069 Pkinase 5.00E-52 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1611 - - - 0.0