Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g1615 | ATGTCAACTGTGCAAACGCTGCTGCTATTGGTTTTATTCTACGCTGGAATCGACACAACTGGTTCTGTTACTGATCCCCGCGATTCTGTGGCAATGGAGTCCCTGAAAAGTGAATGGCAAAATACTCCACCAAGTTGGGGAACATCAAATGATCCATGTGGAACTCCCAGTTGGGAAGGAGTGACTTGCATCAATTCAAGAGTAACTCAACTGAGACTATCAACTATGAGCCTAAAAGGTCAACTTGGTGGTGACATTGGAGGCCTCACTGAACTAACATCTTTGGACCTTTCCTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGAATCTACAGAAGTTAACTATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATTCCTGAAGAACTGGGCAATCTTGCTGAGCTATCCTTCTTGGCTTTAAATTCCAATAATTTCACTGGTTCCATACCACCATCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTTGCAGTTAATCAATTGACAGGTGGTCTCCCAGTCTCCACTTCTGAATCTCCTGGTTTGGATCTCCTTCACAAGGCTAAACATTTTCATTTCAACAAAAACAGGCTATCAGGTTCCATTTCACCAAAACTTTTTAGCTCTGAAATGATATTAATACACATATTGTTTGATGGAAATAAATTTTCTGGGAGTATCCCAGAAACATTGGGACTTGTTAAGACCCTGGAGGTTCTGCGACTTGATCGGAATTCTCTAACCGGAGTCGTCCCATCGAACCTGAACAACCTAACAAATATCAATGAACTGAATTTAGCCAACAATAAGTTGACTGGTCCATTGCCAAATTTAACTCAAATGGATTCACTAAATTATGTGGACCTTAGTAACAATTCATTTGATTCATCAGAAGCTCCAGAATGGTTCTCAAATCTACAACTTCTTACCACTCTGATTGTTGAATATGGATCAATACAAGGATCTGTGCCACCAGGAGTCTTTGGCTTACCACAAATCCAACAAATAAAACTGAAGAACAATTCATTCAATGGCACATTAGATCTCGGTGAAAAAATCAGCCAACAGTTGCAGCTCATTGATTTGCAATACAACAATATTTCTGAATTTACCCATGGTCCAAGATATGATAAGACTTTGATGCTGATGGGTAATCTTGTGTGTTCCACTGATCACACCCTCTCAAATTCAAACTACTGCAAGCTTCAAAGCCAGCCAATGCAACCCTATTCTACAGACCTTACCCACTGTGGACCTAAGTCATGTGCTCCCAATGAGAAGCTAAACCCTCAGAGTTGTCAATGTGCCCATCCATTTCAAGGGGATTTATACTTCAGAGCTCCTTCCTTCAGAGAATTGTCCAATGCCACTTTGTTCCAGTCATTGGAAACTAGCCTTTGCCAAAAACTGGGCCTTACCAATGGCTCAGTTTCTCTTCAAAACCTTGACTTCAATGCTGATGATCACCTTGAGATGGACCTTGCACTTTTTCCACCCAATGGAATCAACTTCTTCAACAGGTCAGAAATTCAGAGGCTTGGGTTTGACTTGAGCAATCAAACTTACAAACCTCCACCAATCTTTGGGCCATATTATTTCATTGCTTCTTCCTATGATTTTGAAGTCACGACCAAGGGGACTTCGATTAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGGTTTTCTCATTCTAGGCCTTATTGGAGTTGGAATATATGCAATTCGGCAAAAGATACGTGCAAAAGAGGCCATGAGATTGAGTCAGCCATTTGCTTCTTGGCCTCCAAGTGGAAACAATAATAGTGGAAGTGCACCAAAATTGAAAGGAGCTAGATGGTTTTCTTACGATGAAGTTAAGAAATGCACAAATAATTTCTCCACAAGCAATGAGATAGGATCTGGGGGATATGGCAAGGTGTATAGAGGAATTCTTGGTGATGGAGAAATAGTTGCGATCAAGAAAGCTCAGCAAGGATCCATGCAGGGTGGCCTCGAGTTCAAAACAGAAATCGAACTGCTTTCAAGAGTTCATCACAAGAACCTTCTTGGCCTTGTGGGATTTTGTTTTGATCAAGGACAGTACATGCTTGTTTATGAGTTCATGCCTAATGGAACACTCAGAGATAGCCTATCAGGAAAATCCGGCATTAGTCTTGATTGGAAGAGAAGACTTCGCCTTGCACTTGAGTCTGCCAGAGGATTGAGTTACTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGTCTGTCTAAACTTGTCTCAGACAGTGAAAAGGGACATGTGTCTACTCAAGTCAAAGGAACAATGGGCTATATGGATCCCGAATATTATATGACTCAACAATTGACTGAGAAAAGCGATGTATATAGTTTTGGAGTACTTATGCTGGAATTGCTAACGGCCAAGCTACCTATCCAAAAAGGAAAGCATATAGTTCGTGAGGTGCGTACGTTGATGAATAGAAATGAAGAAGAATATTATGGTCTAAAAAAGATAATCGATGCAACCATAATAAACAATAGCACAGCTATTAAGGGGTTTGGAAGGTTCTTGGAGTTGGCCATGCAATGTGTTGAAGAATCAGCTGTAGAACGTCCCACAATGAGTGAAGTGGTCAAGGAAATTGAGAGTATTTTGAAGAATTATGGAATGAACACGAACCCAACATCTGCATCCTCATCTGCAACTGACTTTGGTAGTTCCAAAATCACTCCTAGCCATCCCTATAATGATTCTATACCAAAAAAGGACACTAATGATAGTAATAATGCTTTTGATTACAGAGGTGAGTACACTCTCTGA | 2892 | 40.77 | MSTVQTLLLLVLFYAGIDTTGSVTDPRDSVAMESLKSEWQNTPPSWGTSNDPCGTPSWEGVTCINSRVTQLRLSTMSLKGQLGGDIGGLTELTSLDLSFNKDLTGSISPALGNLQKLTILILAGCGFSGNIPEELGNLAELSFLALNSNNFTGSIPPSLGKLSKLYWLDLAVNQLTGGLPVSTSESPGLDLLHKAKHFHFNKNRLSGSISPKLFSSEMILIHILFDGNKFSGSIPETLGLVKTLEVLRLDRNSLTGVVPSNLNNLTNINELNLANNKLTGPLPNLTQMDSLNYVDLSNNSFDSSEAPEWFSNLQLLTTLIVEYGSIQGSVPPGVFGLPQIQQIKLKNNSFNGTLDLGEKISQQLQLIDLQYNNISEFTHGPRYDKTLMLMGNLVCSTDHTLSNSNYCKLQSQPMQPYSTDLTHCGPKSCAPNEKLNPQSCQCAHPFQGDLYFRAPSFRELSNATLFQSLETSLCQKLGLTNGSVSLQNLDFNADDHLEMDLALFPPNGINFFNRSEIQRLGFDLSNQTYKPPPIFGPYYFIASSYDFEVTTKGTSISPGVIIGVAIGCGFLILGLIGVGIYAIRQKIRAKEAMRLSQPFASWPPSGNNNSGSAPKLKGARWFSYDEVKKCTNNFSTSNEIGSGGYGKVYRGILGDGEIVAIKKAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFDQGQYMLVYEFMPNGTLRDSLSGKSGISLDWKRRLRLALESARGLSYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTMGYMDPEYYMTQQLTEKSDVYSFGVLMLELLTAKLPIQKGKHIVREVRTLMNRNEEEYYGLKKIIDATIINNSTAIKGFGRFLELAMQCVEESAVERPTMSEVVKEIESILKNYGMNTNPTSASSSATDFGSSKITPSHPYNDSIPKKDTNDSNNAFDYRGEYTL | 963 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 14347267 | 14362089 | - | Lag0038253.1 | Lac2g1615 | 598879 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g1615 | 963 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 710 | 922 | - | - | |
Lac2g1615 | 963 | SUPERFAMILY | L domain-like | 40 | 396 | - | - | |
Lac2g1615 | 963 | Pfam | Leucine rich repeat N-terminal domain | 28 | 63 | IPR013210 | - | |
Lac2g1615 | 963 | CDD | STKc_IRAK | 640 | 908 | - | - | |
Lac2g1615 | 963 | SUPERFAMILY | Protein kinase-like (PK-like) | 620 | 928 | IPR011009 | - | |
Lac2g1615 | 963 | ProSiteProfiles | Protein kinase domain profile. | 634 | 909 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g1615 | 963 | ProSitePatterns | Protein kinases ATP-binding region signature. | 640 | 663 | IPR017441 | GO:0005524(InterPro) | |
Lac2g1615 | 963 | FunFam | Predicted protein | 187 | 408 | - | - | |
Lac2g1615 | 963 | MobiDBLite | consensus disorder prediction | 919 | 963 | - | - | |
Lac2g1615 | 963 | Gene3D | Transferase(Phosphotransferase) domain 1 | 710 | 942 | - | - | |
Lac2g1615 | 963 | Pfam | Leucine Rich Repeat | 116 | 138 | IPR001611 | GO:0005515(InterPro) | |
Lac2g1615 | 963 | Pfam | Leucine Rich Repeat | 244 | 265 | IPR001611 | GO:0005515(InterPro) | |
Lac2g1615 | 963 | Pfam | Leucine Rich Repeat | 290 | 313 | IPR001611 | GO:0005515(InterPro) | |
Lac2g1615 | 963 | Pfam | Leucine Rich Repeat | 141 | 162 | IPR001611 | GO:0005515(InterPro) | |
Lac2g1615 | 963 | SMART | serkin_6 | 634 | 909 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g1615 | 963 | Pfam | Protein tyrosine and serine/threonine kinase | 636 | 904 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g1615 | 963 | Gene3D | Phosphorylase Kinase; domain 1 | 606 | 709 | - | - | |
Lac2g1615 | 963 | Gene3D | Ribonuclease Inhibitor | 184 | 285 | IPR032675 | - | |
Lac2g1615 | 963 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 754 | 766 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g1615 | 963 | FunFam | Leucine-rich repeat protein kinase family protein | 604 | 709 | - | - | |
Lac2g1615 | 963 | FunFam | Leucine-rich repeat family protein | 27 | 185 | - | - | |
Lac2g1615 | 963 | Gene3D | Ribonuclease Inhibitor | 286 | 399 | IPR032675 | - | |
Lac2g1615 | 963 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 103 | 908 | IPR050647 | - | |
Lac2g1615 | 963 | Gene3D | Ribonuclease Inhibitor | 29 | 183 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g3325 | Lac-Chr10:46977279 | Lac2g1615 | Lac-Chr2:14347267 | 0.00E+00 | dispersed | |
Lac2g1615 | Lac-Chr2:14347267 | Lac7g1602 | Lac-Chr7:18816416 | 8.20E-294 | dispersed | |
Lac2g1611 | Lac-Chr2:14301405 | Lac2g1615 | Lac-Chr2:14347267 | 1.70E-60 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86028 | PF00069 | Pkinase | 2.10E-48 | CL0016 | Lac | PK |
Pathway information
