Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1615 ATGTCAACTGTGCAAACGCTGCTGCTATTGGTTTTATTCTACGCTGGAATCGACACAACTGGTTCTGTTACTGATCCCCGCGATTCTGTGGCAATGGAGTCCCTGAAAAGTGAATGGCAAAATACTCCACCAAGTTGGGGAACATCAAATGATCCATGTGGAACTCCCAGTTGGGAAGGAGTGACTTGCATCAATTCAAGAGTAACTCAACTGAGACTATCAACTATGAGCCTAAAAGGTCAACTTGGTGGTGACATTGGAGGCCTCACTGAACTAACATCTTTGGACCTTTCCTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGAATCTACAGAAGTTAACTATCTTGATCCTAGCTGGGTGTGGCTTCAGTGGCAATATTCCTGAAGAACTGGGCAATCTTGCTGAGCTATCCTTCTTGGCTTTAAATTCCAATAATTTCACTGGTTCCATACCACCATCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTTGCAGTTAATCAATTGACAGGTGGTCTCCCAGTCTCCACTTCTGAATCTCCTGGTTTGGATCTCCTTCACAAGGCTAAACATTTTCATTTCAACAAAAACAGGCTATCAGGTTCCATTTCACCAAAACTTTTTAGCTCTGAAATGATATTAATACACATATTGTTTGATGGAAATAAATTTTCTGGGAGTATCCCAGAAACATTGGGACTTGTTAAGACCCTGGAGGTTCTGCGACTTGATCGGAATTCTCTAACCGGAGTCGTCCCATCGAACCTGAACAACCTAACAAATATCAATGAACTGAATTTAGCCAACAATAAGTTGACTGGTCCATTGCCAAATTTAACTCAAATGGATTCACTAAATTATGTGGACCTTAGTAACAATTCATTTGATTCATCAGAAGCTCCAGAATGGTTCTCAAATCTACAACTTCTTACCACTCTGATTGTTGAATATGGATCAATACAAGGATCTGTGCCACCAGGAGTCTTTGGCTTACCACAAATCCAACAAATAAAACTGAAGAACAATTCATTCAATGGCACATTAGATCTCGGTGAAAAAATCAGCCAACAGTTGCAGCTCATTGATTTGCAATACAACAATATTTCTGAATTTACCCATGGTCCAAGATATGATAAGACTTTGATGCTGATGGGTAATCTTGTGTGTTCCACTGATCACACCCTCTCAAATTCAAACTACTGCAAGCTTCAAAGCCAGCCAATGCAACCCTATTCTACAGACCTTACCCACTGTGGACCTAAGTCATGTGCTCCCAATGAGAAGCTAAACCCTCAGAGTTGTCAATGTGCCCATCCATTTCAAGGGGATTTATACTTCAGAGCTCCTTCCTTCAGAGAATTGTCCAATGCCACTTTGTTCCAGTCATTGGAAACTAGCCTTTGCCAAAAACTGGGCCTTACCAATGGCTCAGTTTCTCTTCAAAACCTTGACTTCAATGCTGATGATCACCTTGAGATGGACCTTGCACTTTTTCCACCCAATGGAATCAACTTCTTCAACAGGTCAGAAATTCAGAGGCTTGGGTTTGACTTGAGCAATCAAACTTACAAACCTCCACCAATCTTTGGGCCATATTATTTCATTGCTTCTTCCTATGATTTTGAAGTCACGACCAAGGGGACTTCGATTAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGGTTTTCTCATTCTAGGCCTTATTGGAGTTGGAATATATGCAATTCGGCAAAAGATACGTGCAAAAGAGGCCATGAGATTGAGTCAGCCATTTGCTTCTTGGCCTCCAAGTGGAAACAATAATAGTGGAAGTGCACCAAAATTGAAAGGAGCTAGATGGTTTTCTTACGATGAAGTTAAGAAATGCACAAATAATTTCTCCACAAGCAATGAGATAGGATCTGGGGGATATGGCAAGGTGTATAGAGGAATTCTTGGTGATGGAGAAATAGTTGCGATCAAGAAAGCTCAGCAAGGATCCATGCAGGGTGGCCTCGAGTTCAAAACAGAAATCGAACTGCTTTCAAGAGTTCATCACAAGAACCTTCTTGGCCTTGTGGGATTTTGTTTTGATCAAGGACAGTACATGCTTGTTTATGAGTTCATGCCTAATGGAACACTCAGAGATAGCCTATCAGGAAAATCCGGCATTAGTCTTGATTGGAAGAGAAGACTTCGCCTTGCACTTGAGTCTGCCAGAGGATTGAGTTACTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAACATTCTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGTCTGTCTAAACTTGTCTCAGACAGTGAAAAGGGACATGTGTCTACTCAAGTCAAAGGAACAATGGGCTATATGGATCCCGAATATTATATGACTCAACAATTGACTGAGAAAAGCGATGTATATAGTTTTGGAGTACTTATGCTGGAATTGCTAACGGCCAAGCTACCTATCCAAAAAGGAAAGCATATAGTTCGTGAGGTGCGTACGTTGATGAATAGAAATGAAGAAGAATATTATGGTCTAAAAAAGATAATCGATGCAACCATAATAAACAATAGCACAGCTATTAAGGGGTTTGGAAGGTTCTTGGAGTTGGCCATGCAATGTGTTGAAGAATCAGCTGTAGAACGTCCCACAATGAGTGAAGTGGTCAAGGAAATTGAGAGTATTTTGAAGAATTATGGAATGAACACGAACCCAACATCTGCATCCTCATCTGCAACTGACTTTGGTAGTTCCAAAATCACTCCTAGCCATCCCTATAATGATTCTATACCAAAAAAGGACACTAATGATAGTAATAATGCTTTTGATTACAGAGGTGAGTACACTCTCTGA 2892 40.77 MSTVQTLLLLVLFYAGIDTTGSVTDPRDSVAMESLKSEWQNTPPSWGTSNDPCGTPSWEGVTCINSRVTQLRLSTMSLKGQLGGDIGGLTELTSLDLSFNKDLTGSISPALGNLQKLTILILAGCGFSGNIPEELGNLAELSFLALNSNNFTGSIPPSLGKLSKLYWLDLAVNQLTGGLPVSTSESPGLDLLHKAKHFHFNKNRLSGSISPKLFSSEMILIHILFDGNKFSGSIPETLGLVKTLEVLRLDRNSLTGVVPSNLNNLTNINELNLANNKLTGPLPNLTQMDSLNYVDLSNNSFDSSEAPEWFSNLQLLTTLIVEYGSIQGSVPPGVFGLPQIQQIKLKNNSFNGTLDLGEKISQQLQLIDLQYNNISEFTHGPRYDKTLMLMGNLVCSTDHTLSNSNYCKLQSQPMQPYSTDLTHCGPKSCAPNEKLNPQSCQCAHPFQGDLYFRAPSFRELSNATLFQSLETSLCQKLGLTNGSVSLQNLDFNADDHLEMDLALFPPNGINFFNRSEIQRLGFDLSNQTYKPPPIFGPYYFIASSYDFEVTTKGTSISPGVIIGVAIGCGFLILGLIGVGIYAIRQKIRAKEAMRLSQPFASWPPSGNNNSGSAPKLKGARWFSYDEVKKCTNNFSTSNEIGSGGYGKVYRGILGDGEIVAIKKAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFDQGQYMLVYEFMPNGTLRDSLSGKSGISLDWKRRLRLALESARGLSYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTMGYMDPEYYMTQQLTEKSDVYSFGVLMLELLTAKLPIQKGKHIVREVRTLMNRNEEEYYGLKKIIDATIINNSTAIKGFGRFLELAMQCVEESAVERPTMSEVVKEIESILKNYGMNTNPTSASSSATDFGSSKITPSHPYNDSIPKKDTNDSNNAFDYRGEYTL 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14347267 14362089 - Lag0038253.1 Lac2g1615 598879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1615 963 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 710 922 - -
Lac2g1615 963 SUPERFAMILY L domain-like 40 396 - -
Lac2g1615 963 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Lac2g1615 963 CDD STKc_IRAK 640 908 - -
Lac2g1615 963 SUPERFAMILY Protein kinase-like (PK-like) 620 928 IPR011009 -
Lac2g1615 963 ProSiteProfiles Protein kinase domain profile. 634 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1615 963 ProSitePatterns Protein kinases ATP-binding region signature. 640 663 IPR017441 GO:0005524(InterPro)
Lac2g1615 963 FunFam Predicted protein 187 408 - -
Lac2g1615 963 MobiDBLite consensus disorder prediction 919 963 - -
Lac2g1615 963 Gene3D Transferase(Phosphotransferase) domain 1 710 942 - -
Lac2g1615 963 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Lac2g1615 963 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515(InterPro)
Lac2g1615 963 Pfam Leucine Rich Repeat 290 313 IPR001611 GO:0005515(InterPro)
Lac2g1615 963 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lac2g1615 963 SMART serkin_6 634 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1615 963 Pfam Protein tyrosine and serine/threonine kinase 636 904 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1615 963 Gene3D Phosphorylase Kinase; domain 1 606 709 - -
Lac2g1615 963 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Lac2g1615 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1615 963 FunFam Leucine-rich repeat protein kinase family protein 604 709 - -
Lac2g1615 963 FunFam Leucine-rich repeat family protein 27 185 - -
Lac2g1615 963 Gene3D Ribonuclease Inhibitor 286 399 IPR032675 -
Lac2g1615 963 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 103 908 IPR050647 -
Lac2g1615 963 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3325 Lac-Chr10:46977279 Lac2g1615 Lac-Chr2:14347267 0.00E+00 dispersed
Lac2g1615 Lac-Chr2:14347267 Lac7g1602 Lac-Chr7:18816416 8.20E-294 dispersed
Lac2g1611 Lac-Chr2:14301405 Lac2g1615 Lac-Chr2:14347267 1.70E-60 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86028 PF00069 Pkinase 2.10E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1615 - - - 0.0