Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1637 ATGTTGGGGAATGGAGGTTTTTGGCTGTCAAGAGTTTCGAGGTGTGGAAGACGAAGATGGACCGACGGGATGAAGCGAATGCATGAGGGCGGTTCTGGTGGGAGGGATGAAGTGGCCATATCTCTCTCCTTTTTCCTTCTCTTCCCTCTCTCCTTCTCCCTTCTTCTCCAAGCATATCTTATTGTCACCATCCACGGCTTGCCATTACTGACTTGTCACTTGCTGTCTCAATATGGAATGAGGGCCAAATTGATACTATTGTTGAGTTTGGAGCCCAAAACAAGACCCATCAAGTTCATGCGGCGAGAAATGCATGCGGCGAGAAAGTCATGCGACGAGAAATGCATGCGGCGAGAAAGTCATGCAGCGAGAAATGCATGCGGCGAGAAAAGTCATGCGGCGAGAAATGCATGCGGCGAGAAAAGTCACTGCGGTGAAATGGAAAAAGATCTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCGAAAACAAAAGATTTAAAAGCAGCTTTTGACACGGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTTAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGGCTCATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAAAAACAGTTCCCAATCAAACGTTCACCTATGAGAATACGATATACCGTACCTGAACAGAACTCTCCATCTCTCCTTGATAAGTTAAATGGCTGGAATGCTAGTATCGTTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCGTTGATGGGTGAACTACAAGGGAGATTCGAAGTTCTCTCTTTCTGTTTGCATGAGGAAGGGGACACCAATGTGGATCAGTATGATGATGATTACGAGAATGTAGAACTCCCACCCAAACAAATCAAAGAATCGCCCATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACCATCTCTGTTGATGGCGGAAATGTGACAAAAGAAGGAAAACGCTGCAGCACATGCAATGTAGTTGTGGGGGATGCTACTCAGTTCAGAGAGCATCACAAGAGTGAATGGCACAAGCACAACGTCAAGCGCAAAACCAAGAATCTCCCTCCTCTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGACTCAGAGTCTGACCTCAAGGACTATTCGTTCTAA 1380 44.42 MLGNGGFWLSRVSRCGRRRWTDGMKRMHEGGSGGRDEVAISLSFFLLFPLSFSLLLQAYLIVTIHGLPLLTCHLLSQYGMRAKLILLLSLEPKTRPIKFMRREMHAARKSCDEKCMRRESHAARNACGEKSHAARNACGEKSHCGEMEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNSPSLLDKLNGWNASIVSNDQSGNQQRSIICELDPSFYRDCNPLMGELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIKESPIPQLSEALQKQTISVDGGNVTKEGKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14666645 14670849 + Lag0038275.1 Lac2g1637 598901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1637 459 FunFam SBDS, ribosome maturation factor 202 274 - -
Lac2g1637 459 Pfam SBDS protein, domain II 213 273 IPR018978 GO:0042254(InterPro)
Lac2g1637 459 ProSitePatterns Zinc finger C2H2 type domain signature. 400 422 IPR013087 -
Lac2g1637 459 Gene3D - 137 198 IPR036786 -
Lac2g1637 459 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 147 204 IPR019783 -
Lac2g1637 459 NCBIfam ribosome assembly factor SBDS 146 332 IPR002140 GO:0042256(InterPro)
Lac2g1637 459 SUPERFAMILY beta-beta-alpha zinc fingers 391 429 IPR036236 -
Lac2g1637 459 PANTHER RIBOSOME MATURATION PROTEIN SBDS 146 350 IPR039100 -
Lac2g1637 459 ProSitePatterns Uncharacterized protein family UPF0023 signature. 148 167 IPR018023 -
Lac2g1637 459 SUPERFAMILY Hypothetical protein AF0491, middle domain 200 273 IPR037188 -
Lac2g1637 459 Gene3D - 202 274 IPR037188 -
Lac2g1637 459 Pfam SBDS protein, C-terminal domain 276 341 IPR046928 -
Lac2g1637 459 SUPERFAMILY FYSH domain 146 198 IPR036786 -
Lac2g1637 459 SMART ZnF_U1_5 395 429 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac2g1637 459 Gene3D - 276 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1637 Lac-Chr2:14666645 Lac8g0546 Lac-Chr8:8101584 2.10E-13 dispersed
Lac2g1632 Lac-Chr2:14600115 Lac2g1637 Lac-Chr2:14666645 1.90E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1637 K14574 - csv:101215380 576.63