Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1686 ATGTCATTTCGCAATATAGTCCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCTAGGCGTAGTTTTGAGGTGAGACTCCCTGGACACCACCGAGGTAAATCTCATGGATCAGTCCATGATCTGCACGACCAACCTCTGGTAATTCAGACCAGCCGTTGGGCTAGCCTCCCACCTGAACTATTGCGGGATGTAGTCATGAGATTGGAGGAGAGTGAGAGCGTGTGGCCTGCACGCAGGAATGTTGTTGCTTGTGCTGCCGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCTGAGTTCTCCGGGAAAATTACCTTCCCTGTCTCCTTAAAGCAGCCAGGGATTCGCGATGGAACTATTCAGTGCTTCATTAAGAGGGACAAATCTAATTTGACTTACCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGACAATGGGAAGTTTCTTCTTTCTGCAAAAAGAACGAGGAGAACGACTTGCACTGAGTACGTGATCTCCATGGATGCTGATAATATATCGAGATCAAGCAACACTTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCGTACAACAATGCCCAGATTTCCCCGCCTGGCCGAAGCCGTAGATTCTATTCGAAAAAAGTTTCTCCAAAGGTCCCAACTGGTAGCTACGACATTGCTCAAGTCTCCTATGAGCTGAACGTTCTTGGCACAAGAGGCCCCCGAAAGATGCACTGCACTATGCACTCCATCCCCGCCTCGTCCCTTGAGCCCGGTGGCACTGTTCCAGGCCAGCCCGAGGTTGTCACTCGACTCCTGGGGGATTCGTTTCGAAGTATATCATTCTCGAAGTCTGTCTTCAATTCCACAGAGTTCAGTAGTTCCCGCTTCTCTGACATTGTTGGTTCACGGGATGAAGATGAAGTGGGGAAGGAGAGACCATTGGTTCTTCGGAACAAGCCACCACGGTGGCATGAGCAGTTGCAGTGTTGGTGTCTTAATTTCAGGGGACGAGTAACTGTTGCCTCTGTCAAAAACTTTCAACTGATAGCTGCAACTGAACCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCCGACCATGATAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTCGACACCAAATTGGCTTGTGAATAG 1293 47.25 MSFRNIVRDVREGFGSLSRRSFEVRLPGHHRGKSHGSVHDLHDQPLVIQTSRWASLPPELLRDVVMRLEESESVWPARRNVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGIRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYDIAQVSYELNVLGTRGPRKMHCTMHSIPASSLEPGGTVPGQPEVVTRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSRDEDEVGKERPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15347784 15350411 - Lag0038324.1 Lac2g1686 598950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1686 430 CDD F-box_AtTLP-like 53 97 - -
Lac2g1686 430 PANTHER TUBBY-RELATED 48 429 - -
Lac2g1686 430 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Lac2g1686 430 MobiDBLite consensus disorder prediction 366 386 - -
Lac2g1686 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Lac2g1686 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Lac2g1686 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Lac2g1686 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Lac2g1686 430 FunFam Tubby-like F-box protein 110 430 - -
Lac2g1686 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Lac2g1686 430 Gene3D - 48 101 - -
Lac2g1686 430 FunFam Tubby-like F-box protein 48 101 - -
Lac2g1686 430 Pfam Tub family 114 425 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Lac2g1686 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1686 Lac-Chr2:15347784 Lac8g1678 Lac-Chr8:34901823 1.50E-207 dispersed
Lac2g1686 Lac-Chr2:15347784 Lac12g2379 Lac-Chr12:40902928 4.10E-120 transposed
Lac2g1686 Lac-Chr2:15347784 Lac7g0837 Lac-Chr7:6759323 4.10E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23514 PF01167 Tub 7.10E-119 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1686 K19600 - csv:101206041 842.417