Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1690 ATGCTTGGCGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGGGAGGCCGCCGCGTCGGAGACGCCTCACCGCCACGACGGGCTCATCGGAGACGTGGGGGACGGCGGGGCTGCGGCGGCGGCGGAGGAGAATAATAACAATTCTGGTGAAGATGAGAGAGGGAGAAGCGGCGGAGGAGGAGGAGACGACGGCGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGGCAAGAGACTTTGGCCCTCTTGAAAATACGGTCGGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACCAAAGAAGTTCGAAGTGGGAAACCGGATAGCAAAACTTATAAGTTTTTTGAACAATTAGAAGCTCTTGAAAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCACCACCTCCCCCACCTCCGGCAATGGCGGCTCCGCCGCCAACCACCGTCATTTCTCACATTCCTTCAACTGTTCCATCGACCACCGCCGCCGTACCCCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCACCTCCAATCCCCGCCTCCTCCCTCTCCATTGCCATCGAATAACCCTACGAGCTTAACCGCCACCGCCGCCGTGCCTTTTCAAACCAATGTCTCTTCGGCGGCGGCGGGAGTGGGGGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACATCTGATGACGTCGACTCGTCGACATCATCAGACGAGGCGTCGAGACGGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGGTTGATGAGGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAACTTGGAGGATGCAAGAAATGGCCAAAATCAGTAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCTAAAGACGCAGCCATCACATCCTTCCTGCAAAAAATAACAGAATCCCACCAAAACAATAACAACAACCCGTCGCAACCGTCGCCGCCGCCGCCACCACCGCAACAACAACAACCAATACCAATGTCGAATCCGACACCGGTCGCACAACCGCCGCCGCCTCCGCCACCACAAGTTTCCACATTGCAAGTAGTTCTTCCAAATTCCACCCCACAAAAAGTGGTGAACAATAGTGAGTTGTTGCAGCAAATGGAGATGATCAAAAGTGATCACAATGGTGGTGAAAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATAAAATTGAGAACAAATCTTGAAGCCAAATATCAAGAGAATGGACCAAAAGGGCCATTGTGGGAAGAGATATCATCAGCAATGAAGAAACTTGGATACAATAGAAATGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAAAGTGAAGGAGAGTAAAAAATCAAGGCCTGAGGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTACAAGGAGAAGAACAACAACAGCAGCAACAACAACAACGGCAACAAGTTCGATAACATCATAATCGGATCTTCGACGCCGATTTTGCCGCATCAACAGCAGCCATTGATGGTTCGGCCCGAGCAACAATGGCCTCCGCAGCAAGACATTGCCCGCCCCGACTCGGGCAATGAAGAGATGGAGAGCGAACCGATGGATCGAGATGATAAAGACGACGACGACGACGAGGAAGACGATGAGGAAGAGGACGAGGGTGGCGGGAACTATGAGATTGTGGCAAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA 1971 50.03 MLGDSTTSVLGGGAGGEAAASETPHRHDGLIGDVGDGGAAAAAEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPPPPPPPAMAAPPPTTVISHIPSTVPSTTAAVPHLMNISFSQPNPTIHLQSPPPPSPLPSNNPTSLTATAAVPFQTNVSSAAAGVGVGFQSIEADLISNSTSDDVDSSTSSDEASRRRRRKRKWKDFFERLMREVIQKQEEMQKRFLEAIEKREQERVVREETWRMQEMAKISREREILAQERSMAAAKDAAITSFLQKITESHQNNNNNPSQPSPPPPPPQQQQPIPMSNPTPVAQPPPPPPPQVSTLQVVLPNSTPQKVVNNSELLQQMEMIKSDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLEAKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESKKSRPEDSKTCPYFHQLDALYKEKNNNSSNNNNGNKFDNIIIGSSTPILPHQQQPLMVRPEQQWPPQQDIARPDSGNEEMESEPMDRDDKDDDDDEEDDEEEDEGGGNYEIVASKPASVSAAE 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15438676 15441326 + Lag0038328.1 Lac2g1690 598954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1690 656 MobiDBLite consensus disorder prediction 614 640 - -
Lac2g1690 656 MobiDBLite consensus disorder prediction 220 234 - -
Lac2g1690 656 ProSiteProfiles Myb-like domain profile. 460 524 IPR001005 -
Lac2g1690 656 MobiDBLite consensus disorder prediction 1 75 - -
Lac2g1690 656 MobiDBLite consensus disorder prediction 214 239 - -
Lac2g1690 656 ProSiteProfiles Myb-like domain profile. 73 131 IPR001005 -
Lac2g1690 656 CDD GT1 467 531 - -
Lac2g1690 656 PANTHER FI21293P1 46 623 - -
Lac2g1690 656 MobiDBLite consensus disorder prediction 376 422 - -
Lac2g1690 656 Gene3D - 468 529 - -
Lac2g1690 656 Gene3D - 75 136 - -
Lac2g1690 656 Coils Coil 309 329 - -
Lac2g1690 656 FunFam Trihelix transcription factor GT-2 468 529 - -
Lac2g1690 656 SMART sant 71 133 IPR001005 -
Lac2g1690 656 SMART sant 464 526 IPR001005 -
Lac2g1690 656 MobiDBLite consensus disorder prediction 593 656 - -
Lac2g1690 656 MobiDBLite consensus disorder prediction 384 421 - -
Lac2g1690 656 Pfam Myb/SANT-like DNA-binding domain 73 159 IPR044822 -
Lac2g1690 656 Pfam Myb/SANT-like DNA-binding domain 466 553 IPR044822 -
Lac2g1690 656 MobiDBLite consensus disorder prediction 48 62 - -
Lac2g1690 656 CDD GT1 73 138 - -
Lac2g1690 656 MobiDBLite consensus disorder prediction 272 294 - -
Lac2g1690 656 FunFam Trihelix transcription factor GT-2 75 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1536 Lac-Chr10:15589180 Lac2g1690 Lac-Chr2:15438676 1.50E-33 dispersed
Lac13g0637 Lac-Chr13:4732206 Lac2g1690 Lac-Chr2:15438676 7.30E-26 dispersed
Lac2g1690 Lac-Chr2:15438676 Lac3g2042 Lac-Chr3:24282417 1.20E-30 dispersed
Lac2g1690 Lac-Chr2:15438676 Lac2g1694 Lac-Chr2:15517935 6.30E-96 proximal
Lac11g1813 Lac-Chr11:32745947 Lac2g1690 Lac-Chr2:15438676 9.60E-93 wgd
Lac2g1690 Lac-Chr2:15438676 Lac9g0286 Lac-Chr9:4524302 1.30E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23516 PF13837 Myb_DNA-bind_4 1.80E-21 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1690 - - - 0.0