Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g1712 | ATGCTGATGGACCCTAATTTCTCCGCGGCCAAACCACCGCACCCGACGGCGATGGACATCGAACAGATGCCGGAGAATCCCCACCGTGGTTCCTACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCTAACCTCGACGAGCTTCTCTTCTTCGACCCTTCTGAGCTCGACCTCTCGATTCTCTCTTCCCCTACTTCTTCCCCTCCCGGCGGCGCTGCCATGGTCGTCGATTCGTCGTCTAATTCCAAGCTGTCCGATGACGCCGTGCGCCCTAAGCCGGAGCCGGTTAACTCCGGACCGTTCGGCGGGCACTTGCGGAGCTTGTCGATGGACTCTGATTTCTTCAAGAATCTGGACCTCGGCGGGGATAGCGGGGAGATCGATTCCTTGGTGAGGAAAACTCCGGTGAGCGAACAGCGGCCGGTTCGTCATCGACATAGCCTGTCTATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCGACCCTAGTGATCGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCGGAGCTAGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTTGCAAATAGACAATCGGCGGCTCGTTCGAAAGAGAGAAAGATACGGTACACGAATGAGCTGGAGAGGAAGGTTCAGACTCTGCAGTCTGAAGCAACCACTCTGTCTGCGCAGGTGACGATGCTACAGCGAGATACTACTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAGCAAGCACAGCTCCGGGATGCTCTGAGCGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGCCAGGTTCCACCAATCAATGGAAATCCTTTCAACCGACCTCCTCAATATCCATCATCCCGGCCGCCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGACACCACCCATCTTGGCCACAAACCAGCAGCAATCAGATCCCAAATGGACGAACTCGTCCCAGCTCCTTGGTCGTAATCCTGATGACCAAGCAAAACCTTAG | 1059 | 54.39 | MLMDPNFSAAKPPHPTAMDIEQMPENPHRGSYHRRSHSDTSFRFPNLDELLFFDPSELDLSILSSPTSSPPGGAAMVVDSSSNSKLSDDAVRPKPEPVNSGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLVRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTMLQRDTTGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPPINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQTPPILATNQQQSDPKWTNSSQLLGRNPDDQAKP | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 15878178 | 15880933 | + | Lag0038350.1 | Lac2g1712 | 598976 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g1712 | 352 | CDD | bZIP_plant_RF2 | 189 | 238 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g1712 | 352 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 19 | 331 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac2g1712 | 352 | MobiDBLite | consensus disorder prediction | 64 | 88 | - | - | |
Lac2g1712 | 352 | MobiDBLite | consensus disorder prediction | 281 | 352 | - | - | |
Lac2g1712 | 352 | MobiDBLite | consensus disorder prediction | 303 | 345 | - | - | |
Lac2g1712 | 352 | Pfam | Basic region leucine zipper | 186 | 237 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g1712 | 352 | SUPERFAMILY | Leucine zipper domain | 188 | 240 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g1712 | 352 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Lac2g1712 | 352 | Coils | Coil | 211 | 259 | - | - | |
Lac2g1712 | 352 | FunFam | Transcription factor VIP1 | 187 | 240 | - | - | |
Lac2g1712 | 352 | MobiDBLite | consensus disorder prediction | 136 | 158 | - | - | |
Lac2g1712 | 352 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 186 | 249 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g1712 | 352 | Gene3D | - | 186 | 246 | - | - | |
Lac2g1712 | 352 | SMART | brlzneu | 184 | 248 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g1712 | 352 | MobiDBLite | consensus disorder prediction | 64 | 105 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g1712 | Lac-Chr2:15878178 | Lac8g1685 | Lac-Chr8:34972939 | 1.20E-88 | dispersed | |
Lac2g1712 | Lac-Chr2:15878178 | Lac12g0542 | Lac-Chr12:5835041 | 2.00E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23518 | PF07716 | bZIP_2 | 5.10E-08 | CL0018 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g1712 | K20557 | - | csv:101207973 | 614.379 |