Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1712 ATGCTGATGGACCCTAATTTCTCCGCGGCCAAACCACCGCACCCGACGGCGATGGACATCGAACAGATGCCGGAGAATCCCCACCGTGGTTCCTACCACCGCCGCTCCCACTCCGACACTTCCTTCCGCTTCCCTAACCTCGACGAGCTTCTCTTCTTCGACCCTTCTGAGCTCGACCTCTCGATTCTCTCTTCCCCTACTTCTTCCCCTCCCGGCGGCGCTGCCATGGTCGTCGATTCGTCGTCTAATTCCAAGCTGTCCGATGACGCCGTGCGCCCTAAGCCGGAGCCGGTTAACTCCGGACCGTTCGGCGGGCACTTGCGGAGCTTGTCGATGGACTCTGATTTCTTCAAGAATCTGGACCTCGGCGGGGATAGCGGGGAGATCGATTCCTTGGTGAGGAAAACTCCGGTGAGCGAACAGCGGCCGGTTCGTCATCGACATAGCCTGTCTATGGATGGTTCTTCGTCGTCGTTTGAGGCCGATTCGACCCTAGTGATCGATGGAGTGAAGAAGGCAATGGACCCGGAGAGACTTGCGGAGCTAGCCCTAATTGACCCGAAAAGAGCTAAAAGGATTCTTGCAAATAGACAATCGGCGGCTCGTTCGAAAGAGAGAAAGATACGGTACACGAATGAGCTGGAGAGGAAGGTTCAGACTCTGCAGTCTGAAGCAACCACTCTGTCTGCGCAGGTGACGATGCTACAGCGAGATACTACTGGATTAACTGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAGCAAGCACAGCTCCGGGATGCTCTGAGCGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGCCAGGTTCCACCAATCAATGGAAATCCTTTCAACCGACCTCCTCAATATCCATCATCCCGGCCGCCTGTACACCATTTTAGTAGCTCCCATGCCCAGCAGGGTCAACAGCAGACACCACCCATCTTGGCCACAAACCAGCAGCAATCAGATCCCAAATGGACGAACTCGTCCCAGCTCCTTGGTCGTAATCCTGATGACCAAGCAAAACCTTAG 1059 54.39 MLMDPNFSAAKPPHPTAMDIEQMPENPHRGSYHRRSHSDTSFRFPNLDELLFFDPSELDLSILSSPTSSPPGGAAMVVDSSSNSKLSDDAVRPKPEPVNSGPFGGHLRSLSMDSDFFKNLDLGGDSGEIDSLVRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLVIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTMLQRDTTGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPPINGNPFNRPPQYPSSRPPVHHFSSSHAQQGQQQTPPILATNQQQSDPKWTNSSQLLGRNPDDQAKP 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15878178 15880933 + Lag0038350.1 Lac2g1712 598976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1712 352 CDD bZIP_plant_RF2 189 238 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g1712 352 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 331 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac2g1712 352 MobiDBLite consensus disorder prediction 64 88 - -
Lac2g1712 352 MobiDBLite consensus disorder prediction 281 352 - -
Lac2g1712 352 MobiDBLite consensus disorder prediction 303 345 - -
Lac2g1712 352 Pfam Basic region leucine zipper 186 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g1712 352 SUPERFAMILY Leucine zipper domain 188 240 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g1712 352 MobiDBLite consensus disorder prediction 1 39 - -
Lac2g1712 352 Coils Coil 211 259 - -
Lac2g1712 352 FunFam Transcription factor VIP1 187 240 - -
Lac2g1712 352 MobiDBLite consensus disorder prediction 136 158 - -
Lac2g1712 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g1712 352 Gene3D - 186 246 - -
Lac2g1712 352 SMART brlzneu 184 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g1712 352 MobiDBLite consensus disorder prediction 64 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1712 Lac-Chr2:15878178 Lac8g1685 Lac-Chr8:34972939 1.20E-88 dispersed
Lac2g1712 Lac-Chr2:15878178 Lac12g0542 Lac-Chr12:5835041 2.00E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23518 PF07716 bZIP_2 5.10E-08 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1712 K20557 - csv:101207973 614.379