Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2022 ATGAAGAAAGAGAATGGCAGGCAGCAGCAGTTCCAAGCTCCACTCAGTCTCAACCTTCCCCAGTTCTCATTAGCCATTCCCATGCCATCATTATTTTATTACCCCTCTCTCCCTTCCCTTTTCCCTTCAAAACTCTCTCAACTCTCAAGGTCAAAAGGTATATACATTCATTCATCCATCCCTCCAATGCCCAAGAATCATCCAACTTGGATGGGTCCCATTATCCTCCTTCTTGTCTTCTTCTTCCTTCCTCTCATCCCCTGCTCCCAAACCCACCAAAACCCCCCATCAATCGACGGCTCTGATCCATCCCAGCCCCTCTCGACGGCCCTGATTCGTGGGGATTTCGAGCTGCCTTCTGCAGGGAGATTGATTCGACTTCAGGAGGGTCTGAGGAAACAATCGTCAATCGAAATAGTATTGAATCTTTGTAGTAGAGAGAAGGTTTTGAAGATGGATCCTGAAGATAGTTTGTGTAGTTCTGAAGTTTGGACAAAATCTTCATCTTTTCCTAATATTAATGCTCAGCAACCTTCTCAGAAATGGGTAGATACTTCCATTTTAGATTATGCTATGGATCAACCTTTTCAAGAATTCGAAGAACAGGACGAATCGAAGGCTTCCCTTACCTGTAACCCGAATCAACAAATCGAAATCCTAAATAAAGACAATGATCAGATGAATGCAGCACTTCTAGCCAGTAAAATTCAGGATTGGGACCCGAGAGCAATGTTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTTGTGCATTTGATTGTTGGCCGAAGGAGCCAAGTCTTGGGGAGGCCGGATGAACTCGTAGTTCAGCAACAGCAGCTGATAACTGCAGATCTAACTTCAATTATTGTTCAGCTAATCTCAACAGCAGGTAGCCTGCTTCCTTCTGTAAAACATAACTTGTCTGCAGCTGTTCCTCCGGTCGGGCAGCTGGAGCAGCTCGACAGGGTTCTTTTCCCATCTGGAGCTGGGACTAATAATGGTGTTGTTCAGTCACAACATGGTGATGGAACGAAACTTCCTGAGCTTCCAACCCAAATGGATGAAAGTAGCAAGTGTGTAAAGGAACAGAACATGACTGTTGAAGAACACGAATCGAAGGATGAAGAAGATGCCGATGAGAGTGAGAGCCTCCCACCTGGTTCGTATGAAATATTACAGCTAGAAAAAGAAGAGATCCTAGCACCTCACACCCACTTCTGTGCAATCTGTGGTAAGGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCATGGCGACGAGTACAAAACTGCAGCTGCTCTTGCAAAGCCGAACAAAGAACTGAGCTCCGAGACGATGCTAATTAAGAGATATTCCTGCCCCTTCACCGGCTGCAAGCGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCATTGCGACAAAAGCTTCACTTGCAGCAAATGCAACTCGAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACTACTTTCTCTAGGAAAGACAAGCTCTTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCTCTTGACGAACCAAAGGGAACAGCCATGTCCTGTGATCGAGGAGAACGCTACGAAACAACGAATAAGCTTGGGAGCATAAGTTTCAGTTTCGGGTCGATTGCTTCAGGAGGAAGTTCAGTTGAAACCATTGCAGAAGCAAAAGGTGGTGTTGATGATCCTCTTAGTTATTTCTCGCCTCTAAACTACGATTCGTGTAATTTCGGTGGCTTTCATGAGTTCCCTCGACCGCCATTTGAGAACACAGAGAATGCATTTTCGTTCCTTATCCCAGCATCTAGCAATTACACCCAAAAATCTGGTGCAGAATCAAGCTCTAATAATCTTGAATGA 1995 44.51 MKKENGRQQQFQAPLSLNLPQFSLAIPMPSLFYYPSLPSLFPSKLSQLSRSKGIYIHSSIPPMPKNHPTWMGPIILLLVFFFLPLIPCSQTHQNPPSIDGSDPSQPLSTALIRGDFELPSAGRLIRLQEGLRKQSSIEIVLNLCSREKVLKMDPEDSLCSSEVWTKSSSFPNINAQQPSQKWVDTSILDYAMDQPFQEFEEQDESKASLTCNPNQQIEILNKDNDQMNAALLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRSQVLGRPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEQLDRVLFPSGAGTNNGVVQSQHGDGTKLPELPTQMDESSKCVKEQNMTVEEHESKDEEDADESESLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKELSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDEPKGTAMSCDRGERYETTNKLGSISFSFGSIASGGSSVETIAEAKGGVDDPLSYFSPLNYDSCNFGGFHEFPRPPFENTENAFSFLIPASSNYTQKSGAESSSNNLE 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22621207 22624190 - Lag0038660.1 Lac2g2022 599286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2022 664 ProSiteProfiles Zinc finger C2H2 type domain profile. 411 438 IPR013087 -
Lac2g2022 664 SMART c2h2final6 460 493 IPR013087 -
Lac2g2022 664 SMART c2h2final6 498 520 IPR013087 -
Lac2g2022 664 SMART c2h2final6 411 433 IPR013087 -
Lac2g2022 664 SUPERFAMILY beta-beta-alpha zinc fingers 409 437 IPR036236 -
Lac2g2022 664 Gene3D Classic Zinc Finger 395 466 - -
Lac2g2022 664 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 214 643 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Lac2g2022 664 ProSitePatterns Zinc finger C2H2 type domain signature. 413 433 IPR013087 -
Lac2g2022 664 MobiDBLite consensus disorder prediction 337 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2069 Lac-Chr10:29715411 Lac2g2022 Lac-Chr2:22621207 2.70E-61 dispersed
Lac1g2819 Lac-Chr1:49248936 Lac2g2022 Lac-Chr2:22621207 4.80E-64 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23522 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2022 - - - 0.0