Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g2055 | ATGATAAAGCACGCGCATTCATTGATTCAAATTCCCAACAAAATCCAATTCAGCCGAAGCATTAGCAGACTCAGATTCTGTTCGTCGATCCTTCATTCCTCCGCCTTCCAAATCAAACCGCTGGGGAATCTCACTTCCACTCGTTCCCGCAAACGCCGTCGCCGGCCGTCCATGGCCGCCTCCGCCTCCGCCGCGGGCAACTCTTCATCCACCTCTTCTTCCTCCTCTAACCCTTTCATTTTCTTCCCCGATTCTCCCCCCAGGCTCTCTCTCTCACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAGGGAGAAGCTCCAGATGCCTAATGTGATCAATCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGGATCTGATATGAGGAGAAGTTGCTCTGTGGCTCTTGACAATGTCAACATAAATAAAAATCGTTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGCTATATCAATGCAAGCTTTATTTCGACTTCATCCTCAAAAAGCCTTTCTACATTTATTGCCACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAATATAAATGCCCTGCAATCTTGATGCTTACACGTCTTGTTGATAATTACAAGGTATTATGTCTTTCTGATTTGAATTTTGATGGAAAGTGGGGTCTTGTTGGTGACCTTCATTTGAACATTGAGCGTTGGTCCGATGAAAAGCATTCTCACCCGGAATTCATCAAGAGCTATGGAGGTCGGATATCTATAAAGAACTTACCTTCAATTTATTGGAAACGACCATGTTTTGAAGCTATTGGGCAACATTTTGGTGGATTGATTAGTATTTCCTCTCAAACACTTAACTTAATTGATTGTTCAGCAACAGTTATTGAAGTGGAGGAAAACATTTGTGGCTTCATTCCAGCTAAGATTGATGTTAAAGGCGGGAATATCAGAAATTTCTCTCTCCGTTTTGGTGACATTGTTCCTCTTGACCTTTCAGGTGAGTGTCGTTCGAATTCTGGAATTTTATCCTCACAAGATTTTACTAATTCAGTGGATTTAAAGAGGGTTAATCAGGTTCTGGAAGATGAAAGTCTCTTTTTACCACACGAAGACGATTTGGTGATGGCTATTGGGGGTCGTTTGGTCAACCAAACACGGGCATCCCTTTCCAATCCATGCCAATCCATTCCAAACCCTTGGGCCAAACGGCACCTTGAGGATTCAAAGGCCCTTTCGGATGGGCATGCAAAGGTTAACTCCCTTGAGCTGGTGTCTCCTTTGCATTCGTAG | 1359 | 43.93 | MIKHAHSLIQIPNKIQFSRSISRLRFCSSILHSSAFQIKPLGNLTSTRSRKRRRRPSMAASASAAGNSSSTSSSSSNPFIFFPDSPPRLSLSPHQIKLCSEALEAFREKLQMPNVINQEFARLQAKRITGSDMRRSCSVALDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSTFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKVLCLSDLNFDGKWGLVGDLHLNIERWSDEKHSHPEFIKSYGGRISIKNLPSIYWKRPCFEAIGQHFGGLISISSQTLNLIDCSATVIEVEENICGFIPAKIDVKGGNIRNFSLRFGDIVPLDLSGECRSNSGILSSQDFTNSVDLKRVNQVLEDESLFLPHEDDLVMAIGGRLVNQTRASLSNPCQSIPNPWAKRHLEDSKALSDGHAKVNSLELVSPLHS | 452 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23496965 | 23500931 | - | Lag0038693.1 | Lac2g2055 | 599319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g2055 | 452 | SMART | PTPc_3 | 115 | 384 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Lac2g2055 | 452 | MobiDBLite | consensus disorder prediction | 61 | 77 | - | - | |
Lac2g2055 | 452 | Gene3D | Protein tyrosine phosphatase superfamily | 90 | 258 | IPR029021 | - | |
Lac2g2055 | 452 | PRINTS | Protein tyrosine phosphatase signature | 176 | 183 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Lac2g2055 | 452 | PRINTS | Protein tyrosine phosphatase signature | 194 | 214 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Lac2g2055 | 452 | ProSiteProfiles | PTP type protein phosphatase domain profile. | 116 | 234 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Lac2g2055 | 452 | Pfam | Protein-tyrosine phosphatase | 145 | 234 | IPR000242 | GO:0004725(InterPro)|GO:0006470(InterPro) | |
Lac2g2055 | 452 | PANTHER | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE | 54 | 234 | IPR050348 | GO:0004725(PANTHER) | |
Lac2g2055 | 452 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 94 | 235 | IPR029021 | - | |
Lac2g2055 | 452 | MobiDBLite | consensus disorder prediction | 42 | 77 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g2055 | Lac-Chr2:23496965 | Lac7g0987 | Lac-Chr7:8442180 | 3.70E-87 | dispersed | |
Lac9g2980 | Lac-Chr9:47471286 | Lac2g2055 | Lac-Chr2:23496965 | 4.20E-19 | transposed | |
Lac1g0059 | Lac-Chr1:1053795 | Lac2g2055 | Lac-Chr2:23496965 | 1.10E-41 | wgd | |
Lac2g2055 | Lac-Chr2:23496965 | Lac3g2138 | Lac-Chr3:26652874 | 1.40E-22 | wgd | |
Lac2g2055 | Lac-Chr2:23496965 | Lac5g1223 | Lac-Chr5:22533104 | 1.00E-28 | wgd |
Pathway information
