Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2055 ATGATAAAGCACGCGCATTCATTGATTCAAATTCCCAACAAAATCCAATTCAGCCGAAGCATTAGCAGACTCAGATTCTGTTCGTCGATCCTTCATTCCTCCGCCTTCCAAATCAAACCGCTGGGGAATCTCACTTCCACTCGTTCCCGCAAACGCCGTCGCCGGCCGTCCATGGCCGCCTCCGCCTCCGCCGCGGGCAACTCTTCATCCACCTCTTCTTCCTCCTCTAACCCTTTCATTTTCTTCCCCGATTCTCCCCCCAGGCTCTCTCTCTCACCCCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAGGGAGAAGCTCCAGATGCCTAATGTGATCAATCAGGAGTTCGCCCGATTGCAGGCCAAGAGAATAACTGGATCTGATATGAGGAGAAGTTGCTCTGTGGCTCTTGACAATGTCAACATAAATAAAAATCGTTACACGGATGTATTACCCTTTGATGAGACTAGAGTTGTACTTGACTCATGTAAGGATTACAGACCTTCTGCAAGGGGCTATATCAATGCAAGCTTTATTTCGACTTCATCCTCAAAAAGCCTTTCTACATTTATTGCCACACAAGGTCCATTACCACACACTTATGAGGATTTCTGGGAGATGGTATTTCAATATAAATGCCCTGCAATCTTGATGCTTACACGTCTTGTTGATAATTACAAGGTATTATGTCTTTCTGATTTGAATTTTGATGGAAAGTGGGGTCTTGTTGGTGACCTTCATTTGAACATTGAGCGTTGGTCCGATGAAAAGCATTCTCACCCGGAATTCATCAAGAGCTATGGAGGTCGGATATCTATAAAGAACTTACCTTCAATTTATTGGAAACGACCATGTTTTGAAGCTATTGGGCAACATTTTGGTGGATTGATTAGTATTTCCTCTCAAACACTTAACTTAATTGATTGTTCAGCAACAGTTATTGAAGTGGAGGAAAACATTTGTGGCTTCATTCCAGCTAAGATTGATGTTAAAGGCGGGAATATCAGAAATTTCTCTCTCCGTTTTGGTGACATTGTTCCTCTTGACCTTTCAGGTGAGTGTCGTTCGAATTCTGGAATTTTATCCTCACAAGATTTTACTAATTCAGTGGATTTAAAGAGGGTTAATCAGGTTCTGGAAGATGAAAGTCTCTTTTTACCACACGAAGACGATTTGGTGATGGCTATTGGGGGTCGTTTGGTCAACCAAACACGGGCATCCCTTTCCAATCCATGCCAATCCATTCCAAACCCTTGGGCCAAACGGCACCTTGAGGATTCAAAGGCCCTTTCGGATGGGCATGCAAAGGTTAACTCCCTTGAGCTGGTGTCTCCTTTGCATTCGTAG 1359 43.93 MIKHAHSLIQIPNKIQFSRSISRLRFCSSILHSSAFQIKPLGNLTSTRSRKRRRRPSMAASASAAGNSSSTSSSSSNPFIFFPDSPPRLSLSPHQIKLCSEALEAFREKLQMPNVINQEFARLQAKRITGSDMRRSCSVALDNVNINKNRYTDVLPFDETRVVLDSCKDYRPSARGYINASFISTSSSKSLSTFIATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKVLCLSDLNFDGKWGLVGDLHLNIERWSDEKHSHPEFIKSYGGRISIKNLPSIYWKRPCFEAIGQHFGGLISISSQTLNLIDCSATVIEVEENICGFIPAKIDVKGGNIRNFSLRFGDIVPLDLSGECRSNSGILSSQDFTNSVDLKRVNQVLEDESLFLPHEDDLVMAIGGRLVNQTRASLSNPCQSIPNPWAKRHLEDSKALSDGHAKVNSLELVSPLHS 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23496965 23500931 - Lag0038693.1 Lac2g2055 599319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2055 452 SMART PTPc_3 115 384 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac2g2055 452 MobiDBLite consensus disorder prediction 61 77 - -
Lac2g2055 452 Gene3D Protein tyrosine phosphatase superfamily 90 258 IPR029021 -
Lac2g2055 452 PRINTS Protein tyrosine phosphatase signature 176 183 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac2g2055 452 PRINTS Protein tyrosine phosphatase signature 194 214 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac2g2055 452 ProSiteProfiles PTP type protein phosphatase domain profile. 116 234 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac2g2055 452 Pfam Protein-tyrosine phosphatase 145 234 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Lac2g2055 452 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 54 234 IPR050348 GO:0004725(PANTHER)
Lac2g2055 452 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 235 IPR029021 -
Lac2g2055 452 MobiDBLite consensus disorder prediction 42 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2055 Lac-Chr2:23496965 Lac7g0987 Lac-Chr7:8442180 3.70E-87 dispersed
Lac9g2980 Lac-Chr9:47471286 Lac2g2055 Lac-Chr2:23496965 4.20E-19 transposed
Lac1g0059 Lac-Chr1:1053795 Lac2g2055 Lac-Chr2:23496965 1.10E-41 wgd
Lac2g2055 Lac-Chr2:23496965 Lac3g2138 Lac-Chr3:26652874 1.40E-22 wgd
Lac2g2055 Lac-Chr2:23496965 Lac5g1223 Lac-Chr5:22533104 1.00E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2055 - - - 0.0