Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2300 ATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCGTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTTTTGCAGAGTTGGGATCCCACTCTTGTCAATCCCTGTACATGGTTTCACGTTACATGCAATAATGATAATAGTGTCATAAGAGTCGATCTTGGAAATGCAGCTTTGTCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATTTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCTAGCGATCTTGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACACCTTTTCCGGTCCGATTCCAGACACATTGGGGAAGCTGTCGAAACTGCGGTTCCTCCGGCTGAACAACAACAGCTTATCAGGTCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTCTTGGATCTATCGAATAATCATCTCTCAGGCCCAGTTCCAGATAATGGTTCCTTCTCCTTATTCACTCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGACGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCCTTTGTCCCACCACCACCTATATCTTCACCAGGAGGGAATAGTGCAACTGGAGCTATTGCTGGTGGCGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGAAAACCCCAAGAAGTTTTCTTTGACGTTCCTGCCGAAGAGGATCCTGAAGTTCATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAGGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACGCCTGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCCGTGCATCGGAACCTGCTACGACTACGTGGATTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGTTTAAGAGAACGACCACCGTCCCAACCACCTCTTGATTGGAAAACGAGGAAGCGAATTGCATTGGGATCTGCAAGAGGGCTGTCTTATTTGCACGATCACTGTGATCCAAAGATCATTCACCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCCGTTGTAGGGGATTTCGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACTACTGCGGTACGCGGTACTATCGGACATATAGCTCCCGAGTACCTCTCCACCGGGAAATCGTCCGAGAAAACAGATGTTTTTGGGTATGGTATCATGCTTCTAGAGCTGATCACTGGACAAAGGGCTTTCGATTTGGCTCGACTTGCGAATGATGATGATGTCATGCTACTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGATCCTGATCTTCAGAACAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAGGTTGCCCTGCTCTGCACACAAGGCTCCCCGATGGACCGACCAAAGATGTCCGAGGTGGTGAGAATGCTCGAAGGCGACGGATTGGCAGAAAGATGGGACGAGTGGCAAAAGGTGGAAATCCATCGGCAAGAAGTCGATCTTTCGCCTCATCCAAATTCCGATTGGATTCTCGATTCAACTGAAAATCTACATGCAGTTGAGCTTTCTGGTCCAAGATGA 1884 45.75 MEMEQFKVLALGFVSLILLVRPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNTFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEIHRQEVDLSPHPNSDWILDSTENLHAVELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31343464 31351987 + Lag0038938.1 Lac2g2300 599564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2300 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Lac2g2300 627 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Lac2g2300 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Lac2g2300 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Lac2g2300 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Lac2g2300 627 Pfam Protein tyrosine and serine/threonine kinase 307 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g2300 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2300 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Lac2g2300 627 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Lac2g2300 627 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Lac2g2300 627 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Lac2g2300 627 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Lac2g2300 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Lac2g2300 627 CDD STK_BAK1_like 310 581 - -
Lac2g2300 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g2300 627 SUPERFAMILY L domain-like 32 194 - -
Lac2g2300 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Lac2g2300 627 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2300 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Lac2g2300 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0377 Lac-Chr10:2941527 Lac2g2300 Lac-Chr2:31343464 3.00E-76 dispersed
Lac2g2300 Lac-Chr2:31343464 Lac6g1302 Lac-Chr6:13140525 2.70E-144 dispersed
Lac4g2123 Lac-Chr4:40828968 Lac2g2300 Lac-Chr2:31343464 1.50E-28 dispersed
Lac2g2298 Lac-Chr2:31301489 Lac2g2300 Lac-Chr2:31343464 1.90E-15 proximal
Lac10g2599 Lac-Chr10:40011142 Lac2g2300 Lac-Chr2:31343464 3.10E-20 transposed
Lac12g0182 Lac-Chr12:2057667 Lac2g2300 Lac-Chr2:31343464 1.20E-27 transposed
Lac12g0267 Lac-Chr12:2947561 Lac2g2300 Lac-Chr2:31343464 1.10E-165 transposed
Lac3g1249 Lac-Chr3:10666009 Lac2g2300 Lac-Chr2:31343464 1.50E-30 transposed
Lac5g2024 Lac-Chr5:38675701 Lac2g2300 Lac-Chr2:31343464 9.50E-243 transposed
Lac5g2713 Lac-Chr5:45595236 Lac2g2300 Lac-Chr2:31343464 9.10E-222 transposed
Lac9g0054 Lac-Chr9:814507 Lac2g2300 Lac-Chr2:31343464 4.80E-123 transposed
Lac13g1824 Lac-Chr13:22074392 Lac2g2300 Lac-Chr2:31343464 3.10E-62 wgd
Lac2g2138 Lac-Chr2:26456278 Lac2g2300 Lac-Chr2:31343464 6.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86037 PF00069 Pkinase 8.40E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2300 K13418 - csv:101208695 1137.87