Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g2300 | ATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCGTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTTTTGCAGAGTTGGGATCCCACTCTTGTCAATCCCTGTACATGGTTTCACGTTACATGCAATAATGATAATAGTGTCATAAGAGTCGATCTTGGAAATGCAGCTTTGTCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATTTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCTAGCGATCTTGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACACCTTTTCCGGTCCGATTCCAGACACATTGGGGAAGCTGTCGAAACTGCGGTTCCTCCGGCTGAACAACAACAGCTTATCAGGTCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTCTTGGATCTATCGAATAATCATCTCTCAGGCCCAGTTCCAGATAATGGTTCCTTCTCCTTATTCACTCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGACGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCCTTTGTCCCACCACCACCTATATCTTCACCAGGAGGGAATAGTGCAACTGGAGCTATTGCTGGTGGCGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGAAAACCCCAAGAAGTTTTCTTTGACGTTCCTGCCGAAGAGGATCCTGAAGTTCATCTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAGGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACGCCTGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCCGTGCATCGGAACCTGCTACGACTACGTGGATTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGTTTAAGAGAACGACCACCGTCCCAACCACCTCTTGATTGGAAAACGAGGAAGCGAATTGCATTGGGATCTGCAAGAGGGCTGTCTTATTTGCACGATCACTGTGATCCAAAGATCATTCACCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCCGTTGTAGGGGATTTCGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACTACTGCGGTACGCGGTACTATCGGACATATAGCTCCCGAGTACCTCTCCACCGGGAAATCGTCCGAGAAAACAGATGTTTTTGGGTATGGTATCATGCTTCTAGAGCTGATCACTGGACAAAGGGCTTTCGATTTGGCTCGACTTGCGAATGATGATGATGTCATGCTACTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGCTAGAAATGCTGGTTGATCCTGATCTTCAGAACAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAGGTTGCCCTGCTCTGCACACAAGGCTCCCCGATGGACCGACCAAAGATGTCCGAGGTGGTGAGAATGCTCGAAGGCGACGGATTGGCAGAAAGATGGGACGAGTGGCAAAAGGTGGAAATCCATCGGCAAGAAGTCGATCTTTCGCCTCATCCAAATTCCGATTGGATTCTCGATTCAACTGAAAATCTACATGCAGTTGAGCTTTCTGGTCCAAGATGA | 1884 | 45.75 | MEMEQFKVLALGFVSLILLVRPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPSDLGNLTSLVSLDLYLNTFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWKTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEIHRQEVDLSPHPNSDWILDSTENLHAVELSGPR | 627 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 31343464 | 31351987 | + | Lag0038938.1 | Lac2g2300 | 599564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g2300 | 627 | ProSitePatterns | Protein kinases ATP-binding region signature. | 310 | 332 | IPR017441 | GO:0005524(InterPro) | |
Lac2g2300 | 627 | Pfam | Leucine rich repeat N-terminal domain | 29 | 68 | IPR013210 | - | |
Lac2g2300 | 627 | FunFam | Somatic embryogenesis receptor kinase 1 | 27 | 214 | - | - | |
Lac2g2300 | 627 | Gene3D | Ribonuclease Inhibitor | 27 | 214 | IPR032675 | - | |
Lac2g2300 | 627 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 381 | 598 | - | - | |
Lac2g2300 | 627 | Pfam | Protein tyrosine and serine/threonine kinase | 307 | 578 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g2300 | 627 | ProSiteProfiles | Protein kinase domain profile. | 304 | 591 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g2300 | 627 | Gene3D | Phosphorylase Kinase; domain 1 | 273 | 380 | - | - | |
Lac2g2300 | 627 | Pfam | Leucine Rich Repeat | 144 | 165 | IPR001611 | GO:0005515(InterPro) | |
Lac2g2300 | 627 | Pfam | Leucine Rich Repeat | 168 | 186 | IPR001611 | GO:0005515(InterPro) | |
Lac2g2300 | 627 | Pfam | Leucine Rich Repeat | 120 | 142 | IPR001611 | GO:0005515(InterPro) | |
Lac2g2300 | 627 | Pfam | Leucine Rich Repeat | 96 | 118 | IPR001611 | GO:0005515(InterPro) | |
Lac2g2300 | 627 | Gene3D | Transferase(Phosphotransferase) domain 1 | 381 | 598 | - | - | |
Lac2g2300 | 627 | CDD | STK_BAK1_like | 310 | 581 | - | - | |
Lac2g2300 | 627 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 427 | 439 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g2300 | 627 | SUPERFAMILY | L domain-like | 32 | 194 | - | - | |
Lac2g2300 | 627 | SUPERFAMILY | Protein kinase-like (PK-like) | 283 | 579 | IPR011009 | - | |
Lac2g2300 | 627 | SMART | serkin_6 | 304 | 578 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g2300 | 627 | FunFam | Somatic embryogenesis receptor kinase 1 | 273 | 380 | - | - | |
Lac2g2300 | 627 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 14 | 627 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0377 | Lac-Chr10:2941527 | Lac2g2300 | Lac-Chr2:31343464 | 3.00E-76 | dispersed | |
Lac2g2300 | Lac-Chr2:31343464 | Lac6g1302 | Lac-Chr6:13140525 | 2.70E-144 | dispersed | |
Lac4g2123 | Lac-Chr4:40828968 | Lac2g2300 | Lac-Chr2:31343464 | 1.50E-28 | dispersed | |
Lac2g2298 | Lac-Chr2:31301489 | Lac2g2300 | Lac-Chr2:31343464 | 1.90E-15 | proximal | |
Lac10g2599 | Lac-Chr10:40011142 | Lac2g2300 | Lac-Chr2:31343464 | 3.10E-20 | transposed | |
Lac12g0182 | Lac-Chr12:2057667 | Lac2g2300 | Lac-Chr2:31343464 | 1.20E-27 | transposed | |
Lac12g0267 | Lac-Chr12:2947561 | Lac2g2300 | Lac-Chr2:31343464 | 1.10E-165 | transposed | |
Lac3g1249 | Lac-Chr3:10666009 | Lac2g2300 | Lac-Chr2:31343464 | 1.50E-30 | transposed | |
Lac5g2024 | Lac-Chr5:38675701 | Lac2g2300 | Lac-Chr2:31343464 | 9.50E-243 | transposed | |
Lac5g2713 | Lac-Chr5:45595236 | Lac2g2300 | Lac-Chr2:31343464 | 9.10E-222 | transposed | |
Lac9g0054 | Lac-Chr9:814507 | Lac2g2300 | Lac-Chr2:31343464 | 4.80E-123 | transposed | |
Lac13g1824 | Lac-Chr13:22074392 | Lac2g2300 | Lac-Chr2:31343464 | 3.10E-62 | wgd | |
Lac2g2138 | Lac-Chr2:26456278 | Lac2g2300 | Lac-Chr2:31343464 | 6.70E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86037 | PF00069 | Pkinase | 8.40E-45 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g2300 | K13418 | - | csv:101208695 | 1137.87 |