Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2618 ATGGATACCAAAGGCCGACTCATTGCTGGCTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTGAGTGGTCAAATTTGCCAGATCTGTGGGGATGAGCTAGAAGTGACCGTTGATGGAGAGCCATTTGTTGCTTGTAACGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGGGTTGAAGGAGATGAAGAAGAAGATGATATCGATGATCTGGAGAATGAGTTTGACATTGCAAACAAGGATCCTAACAGTGTTTCTGAGGCAATGCTCTATCCTCATCTCGCGGTCGGCCGTGGTTCTCATGCTAATGGTTCTGGAAATATGGCTTCTGACCTCGACTCCTCATCTGTCCCGACTGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGGAAAAAGGTCCATCCGGTGCCATTCACTGATTCTTCCATGTCTGCCAATCCAAGGCCAATGGATCCAAAAAAGGATCTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAGGAGTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAAGGTGGCGGTGGAAAAGGCGATGATGAGTTTGACGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAATTGCCTATCTCCTCTAGCAAGATAAATCCATACAGAATGATAATCGTACTTCGTATTGTTATTCTTTGCCTCTTTTTCCACTATCGTATCCTTCATCCTGTCAATGAGGCATATGGACTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGTTATCATTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATTTATGTCAGTACGGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTGTCTATTCTTGCTGTTGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCTGATGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCAGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAGTGGTATTTTGCCCAGAAGGTCGACTATTTGAAAGACAAAGTTGATCCTACATTCGTCAGGGAACGACGTGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTTCCATGGCTCAAAAAGTTCCTGAAGATGGGTGGACAATGCAGGATGGAACTCCATGGCCTGGGAACAACGTCAGGGATCATCCCGGGATGATTCAGGTATTCCTTGGTCAAAATGGGGTTCGTGACTTGGAGGGAAATGAATTGCCACGTCTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGTGTCTCCGCAATCATCTCGAATGCTCCATACATGTTGAATGTTGATTGTGATCACTACATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGCTTCATGATGGACCCAATTTCTGGAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCGAATCGCAATGTTGTATTCTTCGATGAGGCAGGCTCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAACACCAAGAAGGACTTGTAATTGTCTTCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACAAAAGCAAAGACTAGTGATAAAAAGAAGTTAAAGACCAAAGATACGTCGAAGCAGATTCACGCACTCGAAAATATTGAGGAAGGAATCGAAGGAATAGATAATGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGTCAATCACCAGCATTCATTGCTTCCACACTTATGGAAGACGGTGGCGTGCCTGGAGGAGGGACTTCTGCTTCATTATTGAAAGAAGCCATCCACGTAATCAGTTGCGGTTATGAAGATAAATCTGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACTGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGATGGGCTCTTGGATCTGTTGAAATTCTGTTGAGCAGGCACTGCCCAATATGGTACGGATATGGATGTGGTTTGAAGTGGCTTGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACGTCGATTCCATTGATCGCTTATTGTACCCTCCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATCATTTTCATGGCCCTTTTCATCTCTATAGCAGCGACCGGTATCCTTGAAATGCAGTGGGGAGGTGTTGGGATTCACGATTGGTGGAGAAACGAGCAGTTCTGGGTTATCGGTGGTGCTTCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACTGTCACATCCAAGGGAGGAGATGATGGGGAGTTTGCTGAGCTTTACCTCTTCAAGTGGACATCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATCGGAGTAGTCGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATCGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCCACCATTATCATTGTGTGGTCAATTCTTCTATCATCCATACTGTCGCTTTTATGGGTCCGAATCAACCCCTTCCTCGACAAGGGTGGCATCGTATTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3207 44.59 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPNSVSEAMLYPHLAVGRGSHANGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFTDSSMSANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDEFDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYMLNVDCDHYINNSKALREAMCFMMDPISGKEYAMCSFHKDLMGLIGTIDTRIAMLYSSMRQALYGYDAPAKKKTPRRTCNCLPKWCCCCCGTRKKTKAKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39985040 39990546 + Lag0039256.1 Lac2g2618 599882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2618 1068 Pfam Cellulose synthase 607 1055 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac2g2618 1068 CDD mRING-HC-C4C4_CesA 37 87 - -
Lac2g2618 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Lac2g2618 1068 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Lac2g2618 1068 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 283 1036 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac2g2618 1068 SUPERFAMILY Nucleotide-diphospho-sugar transferases 377 860 IPR029044 -
Lac2g2618 1068 SUPERFAMILY RING/U-box 28 107 - -
Lac2g2618 1068 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lac2g2618 1068 Coils Coil 99 119 - -
Lac2g2618 1068 FunFam Cellulose synthase 21 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2618 Lac-Chr2:39985040 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac1g2418 Lac-Chr1:45617746 Lac2g2618 Lac-Chr2:39985040 0.00E+00 transposed
Lac1g1247 Lac-Chr1:31898198 Lac2g2618 Lac-Chr2:39985040 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2618 K10999 - csv:101214061 2007.26