Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2648 ATGGAAGTTCATTCTTTCATAGTTTCTCGATCAGAAGGTCAAAATACCTTACCTGTAGGGGCAGTTGTTGGAATTGGAAGTGTGGTTGCAATGATCATTATAATTTTGGTTCTCGGAATTTTGTGGTGGAAAGGCTATCTTCGAAGGAAAAATACACATGAGCAAGATTTGAAGGGTAAGAATCTGCCAATTGGTTCATTTACATTAAAGCAAATCACTACTGCAACAAATAACTTTGACACTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGCATTCTTATGGATGGTACCATGATTGCAGTGAAGCAACTTTCTACAAAGTCAAAGCAAGGAAACCGTGAATTTGTGAATGAAATAGGCTTGATATCCTCTTTGAATCACCCAAATCTAGTTAAGCTTTATGGATGTTGTACCGAAGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCACTTCGGACCTCAAGGATGTCGATTAAAATTGGAATGGTCGACAAGGAAAAAGATTTGCATTGGTATAGCCAAAGGCTTGGCTTTTCTTCACCAAGAGTCAAGATTGAAGATAGTTCACCGAGATATCAAAGGTTCTAATGTATTGTTAGATAAAGATCTCAACCCAAAGATATCTGACTTTGGTCTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCTGGAACATTTGGATATATGGCTCCAGAATATGCAACACGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATCGTAGCATTGGAAATTGTTAGTGGAAGGAGCAACACTATGTTTCGAGGAAAGGATAAGTGTCTTTATCTTCTTGATTGGGCACTTGTATTGAAAGAGAAAGGGAGTTTAATGGAGCTAGTTGATCCAAAGTTGGGGTCCAGCTTCGACCAAGAAGAGGCAATGGCAATGATCAATATTGCTTTCCTTTGCACCAATGTCTCTCCCTCGGCGAGACCTACCATGTCCTCCGTGGTGAGCATGTTGGAAGGTAAGGTTCCTATCAAGGAGTTGGTTGCAGATCCAGATCCAGATGACATGGTAAAAGAGATGAGCGAAATGTGGAGCCTTATTCAACAAAACGAGATAATACCCGACGATGAGAACAAGATTGAGACTGCATCGTTTCTAGAGATGCGATCAACCAGTTCTTCAACATCGATGAAGAGTAGAAACTAG 1242 39.77 MEVHSFIVSRSEGQNTLPVGAVVGIGSVVAMIIIILVLGILWWKGYLRRKNTHEQDLKGKNLPIGSFTLKQITTATNNFDTSNKIGEGGFGPVYKGILMDGTMIAVKQLSTKSKQGNREFVNEIGLISSLNHPNLVKLYGCCTEADQLLLVYEYMENNSLAQAHFGPQGCRLKLEWSTRKKICIGIAKGLAFLHQESRLKIVHRDIKGSNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMFRGKDKCLYLLDWALVLKEKGSLMELVDPKLGSSFDQEEAMAMINIAFLCTNVSPSARPTMSSVVSMLEGKVPIKELVADPDPDDMVKEMSEMWSLIQQNEIIPDDENKIETASFLEMRSTSSSTSMKSRN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40772503 40775960 - Lag0039286.1 Lac2g2648 599912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2648 413 Gene3D Transferase(Phosphotransferase) domain 1 155 364 - -
Lac2g2648 413 PIRSF TyrPK_CSF1-R 81 160 - -
Lac2g2648 413 PIRSF TyrPK_CSF1-R 2 48 - -
Lac2g2648 413 PIRSF TyrPK_CSF1-R 316 413 - -
Lac2g2648 413 PIRSF TyrPK_CSF1-R 173 280 - -
Lac2g2648 413 Pfam Protein kinase domain 80 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2648 413 Gene3D Phosphorylase Kinase; domain 1 43 154 - -
Lac2g2648 413 SMART serkin_6 79 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2648 413 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 48 154 - -
Lac2g2648 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g2648 413 SUPERFAMILY Protein kinase-like (PK-like) 61 351 IPR011009 -
Lac2g2648 413 CDD STKc_IRAK 85 352 - -
Lac2g2648 413 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2648 413 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 368 IPR051824 -
Lac2g2648 413 FunFam Putative LRR receptor-like serine/threonine-protein kinase 155 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1142 Lac-Chr2:9093497 Lac2g2648 Lac-Chr2:40772503 4.90E-217 dispersed
Lac2g2648 Lac-Chr2:40772503 Lac5g1090 Lac-Chr5:18037420 2.40E-141 dispersed
Lac5g2500 Lac-Chr5:43542531 Lac2g2648 Lac-Chr2:40772503 3.60E-66 transposed
Lac2g2648 Lac-Chr2:40772503 Lac4g0157 Lac-Chr4:2834852 3.90E-55 wgd
Lac2g2648 Lac-Chr2:40772503 Lac4g0178 Lac-Chr4:3127596 5.40E-48 wgd
Lac2g2648 Lac-Chr2:40772503 Lac5g1633 Lac-Chr5:33156031 1.70E-75 wgd
Lac2g2648 Lac-Chr2:40772503 Lac5g1623 Lac-Chr5:33054586 3.50E-76 wgd
Lac2g2648 Lac-Chr2:40772503 Lac6g2163 Lac-Chr6:37875367 3.00E-16 wgd
Lac2g2648 Lac-Chr2:40772503 Lac9g1517 Lac-Chr9:33816398 6.60E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86040 PF00069 Pkinase 1.90E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2648 - - - 0.0