Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2729 ATGGAAGGACTCTCCCTCAAAGAAGGGGGCACTTATGCAACGTTGATTGCAAAGGCATATGATCATGTGGATTGGAATTTTTTGGATAAGATTTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCCTGGGTTTGCAGTTGTGTTCATTCTCTGGATTACTCGATCCTCGTCAGTGGTTACCCTAAGGTGTCGGCTTCTGGAGATGACGGCGACGTCGGCGACAGACGTGTTTGTGTTTCACCTGTGTCGGATATAGATTCTTTTGCCATATATGACATGTTCATGCTTCCTAGAATCCTAGAACTCCTCTCTTTCTTGGGCCTTGTTTATTGTGAGGTGGGGGATGAGAGGAACATGTTCTTTTGGGAGGATAAGTGGAGGTTTGAGTTAGAGAGGGGAGGAGAGATAGCAGGTGTTGGAGCCCTAGCCCTTCCGAGGCGTTATCGTGTAGTTCTTTCTTTCGTTGGTTGGAACCAACTATTTGTTCAAATTATGTGTAAGAAAGCTGGTCATGTTGGATATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACTCATAGAGTCACAAAGAATGCAAGTGACAGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCCGGACTCTCTATGGTGCCTTGTCTGCCAACTTTCACTAAATTGGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATGGGCGAACGCAAGTATGACTGGACAAAGAAACAGTTTTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCTAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTTATCTCTTTAAATGTTGTTAATAACCCACAAGGCACCAAAGATTTCTTGAGTGTCCCCTTCACAGCAGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCAAACCTAGTCCTGGCATGGGAAAGGTTTCTAAATGGTGTTGGCAAGAACAAGAAGTGCTTCCTGATCTGTTTGGAGTTGGAACAAAGTACTTTGAAAGCGATTTATGTCCCGATGTCTCCATTGGGTCGTCTCCTCTCGACGATTTATCCAAAGCTGCATCCCCTTTAGTTACTGCAGCAATGAATGATTCTTCCCCCTTGAAAGGCTCTAATCATGATATTACACTGGAGATGTTGTATGTTGACAAGCTTGATTACTGTCTTGAGGAGTTGCTCTGTCGCGTTCTTGTTCGTTGGACGGTTCGAGTCCCATCTCAATCTGAATATGTGGTGGTTGGGACGGAGAAAGGACGGAGAGACGGCAGAGTGGGCAAGTGTTGTGGTTGGATAGCCAATGATCAATGCAGTCCAGGTGAAATACATGCCCACATGATGGTATCTTCTGAAGCTTATCTTCTGTTTTGTATTCCCCTAAACAGACTGAGCATCTGCAACAACAAACAAACACACAAGGATTGCTCTCTCAAGATGAGGCAGAAAAGAGAAAGTCAACAAAACATAGGCTGGCTTTAA 1662 44.28 MEGLSLKEGGTYATLIAKAYDHVDWNFLDKILAKKGFGYRWRSWVCSCVHSLDYSILVSGYPKVSASGDDGDVGDRRVCVSPVSDIDSFAIYDMFMLPRILELLSFLGLVYCEVGDERNMFFWEDKWRFELERGGEIAGVGALALPRRYRVVLSFVGWNQLFVQIMCKKAGHVGYPFGSHPFSSRVGIPDSRQNFTHRVTKNASDRVYAAYNVYKGKAGLSMVPCLPTFTKLESGSLVIDRRGSVLLTFFPAMGERKYDWTKKQFFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNPQGTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSPGMGKVSKWCWQEQEVLPDLFGVGTKYFESDLCPDVSIGSSPLDDLSKAASPLVTAAMNDSSPLKGSNHDITLEMLYVDKLDYCLEELLCRVLVRWTVRVPSQSEYVVVGTEKGRRDGRVGKCCGWIANDQCSPGEIHAHMMVSSEAYLLFCIPLNRLSICNNKQTHKDCSLKMRQKRESQQNIGWL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42253020 42266243 + Lag0039367.1 Lac2g2729 599993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2729 553 Gene3D Transcriptional Coactivator Pc4; Chain A 199 367 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac2g2729 553 Pfam Whirly transcription factor 213 347 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lac2g2729 553 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 189 365 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Lac2g2729 553 SUPERFAMILY ssDNA-binding transcriptional regulator domain 204 364 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2729 K26561 - - csv:101219085 349.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2729 Lac-Chr2:42253020 Lac4g0016 Lac-Chr4:359828 4.50E-18 dispersed
Lac6g0040 Lac-Chr6:360355 Lac2g2729 Lac-Chr2:42253020 1.90E-38 transposed
Lac2g2729 Lac-Chr2:42253020 Lac3g1905 Lac-Chr3:21386114 4.50E-18 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0040 . 67 272 Whirly Transcription Factor Family AT1G14410 75.7 5.5e-91 331.6
Lac2g2729 . 204 363 Whirly Transcription Factor Family AT1G71260 67.5 8.6e-59 224.6
Lac6g0040 . 59 272 Whirly Transcription Factor Family AT2G02740 73.0 2.3e-89 326.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23533 PF08536 Whirly 1.80E-52 CL0609 Lac TF