Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g2729 | ATGGAAGGACTCTCCCTCAAAGAAGGGGGCACTTATGCAACGTTGATTGCAAAGGCATATGATCATGTGGATTGGAATTTTTTGGATAAGATTTTGGCTAAGAAGGGTTTTGGTTATCGATGGAGATCCTGGGTTTGCAGTTGTGTTCATTCTCTGGATTACTCGATCCTCGTCAGTGGTTACCCTAAGGTGTCGGCTTCTGGAGATGACGGCGACGTCGGCGACAGACGTGTTTGTGTTTCACCTGTGTCGGATATAGATTCTTTTGCCATATATGACATGTTCATGCTTCCTAGAATCCTAGAACTCCTCTCTTTCTTGGGCCTTGTTTATTGTGAGGTGGGGGATGAGAGGAACATGTTCTTTTGGGAGGATAAGTGGAGGTTTGAGTTAGAGAGGGGAGGAGAGATAGCAGGTGTTGGAGCCCTAGCCCTTCCGAGGCGTTATCGTGTAGTTCTTTCTTTCGTTGGTTGGAACCAACTATTTGTTCAAATTATGTGTAAGAAAGCTGGTCATGTTGGATATCCTTTTGGGTCGCATCCTTTCTCATCTCGAGTTGGCATTCCAGATTCTAGACAAAATTTTACTCATAGAGTCACAAAGAATGCAAGTGACAGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCCGGACTCTCTATGGTGCCTTGTCTGCCAACTTTCACTAAATTGGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAGTACTGCTGACATTCTTTCCTGCCATGGGCGAACGCAAGTATGACTGGACAAAGAAACAGTTTTTTGCATTGTCCCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCTAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGGCCCATGCAGATGGCAATGGCTATTTTATCTCTTTAAATGTTGTTAATAACCCACAAGGCACCAAAGATTTCTTGAGTGTCCCCTTCACAGCAGGCGAATTTTCTGTAATGAAGACAGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCAAACCTAGTCCTGGCATGGGAAAGGTTTCTAAATGGTGTTGGCAAGAACAAGAAGTGCTTCCTGATCTGTTTGGAGTTGGAACAAAGTACTTTGAAAGCGATTTATGTCCCGATGTCTCCATTGGGTCGTCTCCTCTCGACGATTTATCCAAAGCTGCATCCCCTTTAGTTACTGCAGCAATGAATGATTCTTCCCCCTTGAAAGGCTCTAATCATGATATTACACTGGAGATGTTGTATGTTGACAAGCTTGATTACTGTCTTGAGGAGTTGCTCTGTCGCGTTCTTGTTCGTTGGACGGTTCGAGTCCCATCTCAATCTGAATATGTGGTGGTTGGGACGGAGAAAGGACGGAGAGACGGCAGAGTGGGCAAGTGTTGTGGTTGGATAGCCAATGATCAATGCAGTCCAGGTGAAATACATGCCCACATGATGGTATCTTCTGAAGCTTATCTTCTGTTTTGTATTCCCCTAAACAGACTGAGCATCTGCAACAACAAACAAACACACAAGGATTGCTCTCTCAAGATGAGGCAGAAAAGAGAAAGTCAACAAAACATAGGCTGGCTTTAA | 1662 | 44.28 | MEGLSLKEGGTYATLIAKAYDHVDWNFLDKILAKKGFGYRWRSWVCSCVHSLDYSILVSGYPKVSASGDDGDVGDRRVCVSPVSDIDSFAIYDMFMLPRILELLSFLGLVYCEVGDERNMFFWEDKWRFELERGGEIAGVGALALPRRYRVVLSFVGWNQLFVQIMCKKAGHVGYPFGSHPFSSRVGIPDSRQNFTHRVTKNASDRVYAAYNVYKGKAGLSMVPCLPTFTKLESGSLVIDRRGSVLLTFFPAMGERKYDWTKKQFFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLSIKAHADGNGYFISLNVVNNPQGTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSPGMGKVSKWCWQEQEVLPDLFGVGTKYFESDLCPDVSIGSSPLDDLSKAASPLVTAAMNDSSPLKGSNHDITLEMLYVDKLDYCLEELLCRVLVRWTVRVPSQSEYVVVGTEKGRRDGRVGKCCGWIANDQCSPGEIHAHMMVSSEAYLLFCIPLNRLSICNNKQTHKDCSLKMRQKRESQQNIGWL | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 42253020 | 42266243 | + | Lag0039367.1 | Lac2g2729 | 599993 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g2729 | 553 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 199 | 367 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Lac2g2729 | 553 | Pfam | Whirly transcription factor | 213 | 347 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
| Lac2g2729 | 553 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 189 | 365 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
| Lac2g2729 | 553 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 204 | 364 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g2729 | Lac-Chr2:42253020 | Lac4g0016 | Lac-Chr4:359828 | 4.50E-18 | dispersed | |
| Lac6g0040 | Lac-Chr6:360355 | Lac2g2729 | Lac-Chr2:42253020 | 1.90E-38 | transposed | |
| Lac2g2729 | Lac-Chr2:42253020 | Lac3g1905 | Lac-Chr3:21386114 | 4.50E-18 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23533 | PF08536 | Whirly | 1.80E-52 | CL0609 | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac2g2729 | K26561 | - | csv:101219085 | 349.747 |