Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2839 ATGAAGGAATTTGCAGCGGAAATCGAAAGCTTGGGACGATTAAGACACAAGAACTTGGTTAATCTTCAAGGATGGTGCAAGAAAAACAACGACCTTCTCATAGTTTACGATTACATTCCAAATGGGAGCCTTCATTCCCTTCTGTACCATCCAAAACACAACTCCGTATTGAATTGGAAGCAAAGATTCAACATCCTCAAAGGTATTGCTGCAGGATTACTATATCTTCACGAAGATTGGGAGCAAGTGGTGATCCACCGAGATGTAAAGCCGAGCAATGTACTAATAGATGCCGACATGAATGCTCGATTGAGCGATTTCGGTTTGTCTCGGCAATACGACCACGACCAAGTATCGCACACGACACGAGTTGTCGGCACGATCGGGTACATACCGCCGGAGTTGTTTCGAACAGGGAAGGCGTCGAAGAGTGCCGATGTGTTTGCGTATGGAGTTTTGCTTTTGGAAGTGGCGTGTGGAAGAAAGCCTCTGGGAATGGGATCAGACCAGTTCATATTGGTGGATTGGGTGATGGAATGGTATGAAAATGGTGAGATTCTTTGTGTGGCTGATCCCAAGTTGGATTTGGTTTATGGGGTGGAAGAGATGGAGATGGTATTGCAACTTGGGCTTGTTTGTACTCAATGGAAACCAGAAGCTCGGCCGTCAATGAGACAAGTCATGAGGTTCCTTAATGGAGAAGACCCACTTCCGACACTCGACGCCTGTGTTTGTTCGAAAGCTGAAGTGATTTCGACTATGTATGATTCTTCCTCGTCCATGTCCATCGGCCCTGTCTCTTCTGCCTCCATAAACGTAGGAAGATAG 828 46.14 MKEFAAEIESLGRLRHKNLVNLQGWCKKNNDLLIVYDYIPNGSLHSLLYHPKHNSVLNWKQRFNILKGIAAGLLYLHEDWEQVVIHRDVKPSNVLIDADMNARLSDFGLSRQYDHDQVSHTTRVVGTIGYIPPELFRTGKASKSADVFAYGVLLLEVACGRKPLGMGSDQFILVDWVMEWYENGEILCVADPKLDLVYGVEEMEMVLQLGLVCTQWKPEARPSMRQVMRFLNGEDPLPTLDACVCSKAEVISTMYDSSSSMSIGPVSSASINVGR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44607978 44608805 + Lag0039477.1 Lac2g2839 600103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2839 275 SMART serkin_6 2 231 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2839 275 Gene3D Transferase(Phosphotransferase) domain 1 40 237 - -
Lac2g2839 275 SUPERFAMILY Protein kinase-like (PK-like) 2 263 IPR011009 -
Lac2g2839 275 FunFam L-type lectin-domain containing receptor kinase S.4 39 243 - -
Lac2g2839 275 PANTHER - 1 240 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lac2g2839 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g2839 275 Pfam Protein kinase domain 3 228 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2839 275 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g2839 275 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2084 Lac-Chr10:29993724 Lac2g2839 Lac-Chr2:44607978 4.00E-06 dispersed
Lac2g2839 Lac-Chr2:44607978 Lac3g0147 Lac-Chr3:1017958 5.90E-72 dispersed
Lac2g2839 Lac-Chr2:44607978 Lac10g3254 Lac-Chr10:46565625 1.00E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86041 PF00069 Pkinase 2.10E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2839 - - - 0.0