Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g2958 | ATGGGGAGCCATGGCGCCGCGACGTCGAGCTATCGAGGGGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCCGAGATTCGCGAGCCGGGGAAGAAGACGAGGATATGGTTGGGGAGCTTCGAGACCCCGGAGATGGCGGCAGCAGCTTACGACGTCGCTGCCTACCACTTCCGCGGTCGCGATGCCCGCCTCAACTTTCCACATCTTGTCAATTCTCTTCCCTTTCCTCTTGGCTCAAGTGCTGATGATATCCGCCTCGCTGCCCATGAGGCGGCGTTGCGGCTACGGACGTCACCCGCCGTTGTGTCTGAGGGTGGAGGAAATTCTGGCTCGGGGTTGGCCCCGGTCACCGTGCGGCTATCCCCGAGCCAAATTCAGGCGATTAACGAGTCGTCGTTGGACTCGCCAAAGATGTGGATGCAAATGTCGTCGGAGGGTTTGCTGATGGAGGAGTATTCGAATGCCACTGTGTTTGCTGATGACATGGACGATGAGATGTGGGAGAATATGCACAATGATTCCCTGTGGGATCCTTAG | 537 | 57.73 | MGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLGSSADDIRLAAHEAALRLRTSPAVVSEGGGNSGSGLAPVTVRLSPSQIQAINESSLDSPKMWMQMSSEGLLMEEYSNATVFADDMDDEMWENMHNDSLWDP | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47005522 | 47006058 | - | Lag0039596.1 | Lac2g2958 | 600222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g2958 | 178 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 135 | IPR051032 | - | |
Lac2g2958 | 178 | SUPERFAMILY | DNA-binding domain | 9 | 68 | IPR016177 | GO:0003677(InterPro) | |
Lac2g2958 | 178 | CDD | AP2 | 9 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g2958 | 178 | FunFam | Ethylene-responsive transcription factor 2 | 9 | 68 | - | - | |
Lac2g2958 | 178 | ProSiteProfiles | AP2/ERF domain profile. | 10 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g2958 | 178 | Pfam | AP2 domain | 10 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g2958 | 178 | Gene3D | AP2/ERF domain | 10 | 69 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g2958 | 178 | SMART | rav1_2 | 10 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g2958 | 178 | PRINTS | Ethylene responsive element binding protein signature | 33 | 49 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g2958 | 178 | PRINTS | Ethylene responsive element binding protein signature | 11 | 22 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g2914 | Lac-Chr2:46105281 | Lac2g2958 | Lac-Chr2:47005522 | 5.70E-11 | dispersed | |
Lac2g2958 | Lac-Chr2:47005522 | Lac5g0379 | Lac-Chr5:3982460 | 5.10E-24 | dispersed | |
Lac2g2958 | Lac-Chr2:47005522 | Lac12g1100 | Lac-Chr12:13768080 | 1.10E-23 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23534 | PF00847 | AP2 | 3.40E-13 | CL0081 | Lac | TF |
Pathway information
