Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g2958 ATGGGGAGCCATGGCGCCGCGACGTCGAGCTATCGAGGGGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCCGAGATTCGCGAGCCGGGGAAGAAGACGAGGATATGGTTGGGGAGCTTCGAGACCCCGGAGATGGCGGCAGCAGCTTACGACGTCGCTGCCTACCACTTCCGCGGTCGCGATGCCCGCCTCAACTTTCCACATCTTGTCAATTCTCTTCCCTTTCCTCTTGGCTCAAGTGCTGATGATATCCGCCTCGCTGCCCATGAGGCGGCGTTGCGGCTACGGACGTCACCCGCCGTTGTGTCTGAGGGTGGAGGAAATTCTGGCTCGGGGTTGGCCCCGGTCACCGTGCGGCTATCCCCGAGCCAAATTCAGGCGATTAACGAGTCGTCGTTGGACTCGCCAAAGATGTGGATGCAAATGTCGTCGGAGGGTTTGCTGATGGAGGAGTATTCGAATGCCACTGTGTTTGCTGATGACATGGACGATGAGATGTGGGAGAATATGCACAATGATTCCCTGTGGGATCCTTAG 537 57.73 MGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLGSSADDIRLAAHEAALRLRTSPAVVSEGGGNSGSGLAPVTVRLSPSQIQAINESSLDSPKMWMQMSSEGLLMEEYSNATVFADDMDDEMWENMHNDSLWDP 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47005522 47006058 - Lag0039596.1 Lac2g2958 600222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g2958 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 135 IPR051032 -
Lac2g2958 178 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677(InterPro)
Lac2g2958 178 CDD AP2 9 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g2958 178 FunFam Ethylene-responsive transcription factor 2 9 68 - -
Lac2g2958 178 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g2958 178 Pfam AP2 domain 10 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g2958 178 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g2958 178 SMART rav1_2 10 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g2958 178 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g2958 178 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2914 Lac-Chr2:46105281 Lac2g2958 Lac-Chr2:47005522 5.70E-11 dispersed
Lac2g2958 Lac-Chr2:47005522 Lac5g0379 Lac-Chr5:3982460 5.10E-24 dispersed
Lac2g2958 Lac-Chr2:47005522 Lac12g1100 Lac-Chr12:13768080 1.10E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23534 PF00847 AP2 3.40E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g2958 - - - 0.0