Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g3025 ATGGGCTGCATTTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAGTCACAAAGAGTCTGAAATTGAAAAAGATTTGAACAAATCTTCAGTTCAGTTGGTTGCTCCGTCTCCCTCAAAAGGAGAGGACTTGTTGTTAGAGATTCAATTGTCAAGGCAGGCATCTAAAATAAATGGGGGTTCTGTTCATAAAACAAAGGCAAATGGAGGGTCTGTCCGTCGACCAAAGGAGGATGATGAATCTGTGAATAAATCCCTAAAGGCTACAAAATCAAATAATGATAATGCTTCAGCAGGTAGAAAACAGCCCGACTTTTTTAGGTTTGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACATGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGTCGTGCTGACTCCTTTGAGAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACGGGTAAAACTGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCCTGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGTAAACTTGATCATCCAAATGTTATGAAACTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCAGGCCTTGCGGCAGCTCCTGGACATAAGTTTACTGAGGCTCAGATTAAATGCTATGTGCAACAATTGTTTCACGGACTCGAACATTGTCATAGTCGGGGAGTTTTGCACCGGGATATCAAAGGTTCAAATCTTCTCATTGACAATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGGCCGATCAAAAGCAGCCATTGACAAGTCGTGTAGTGACATTGTGGTACAGGGCACCCGAGCTTTTGCTTGGTGCTACTGAATATGGACCCGCCATAGATCTCTGGAGCTGTGGCTGTATTGTTGCCGAACTATTTGCTGGAAAACCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGTGGTTCACCATCTGAGGAGTTCTGGCGGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACTTTTAAAAGCTTCCCTTCTTCAGCTCTGGCTCTTGTTACTAAACTACTTGCTATTGAACCAGAGCACAGAGGATCGGCTACTTTAGCTCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCGAAATATCCTCCGAGCAAGGAATTTGATGCCAAGCTGCGAAATGAAGAAGAAAGAAAGAAAAAAGCCGAAGCTGTGAAGGGACGTCATCCTGAATCTGTAAGAAGGGGCTCAAGAGACACCAAGGCAGTTCCAACTCCCGAATTCAGTGCTCAAGGAGACATCTCGATAAAGGTACACCCGATCGCGAAAAAGACGAATGCTAAGTACATCCCTCAAGAGGACAGTGAGCCTTCGAGAGTTGTGCAAAGTCGATTTGCCCACTCAACGTCTATGGTGCACCCAAGCATTGCAGGTTCGTGGAGTAAGCCTACCGGAGCCTCGAGAAATTTTGTAGAGTTAAAGACACAGAAATCTCAGATGCATCAGTTAGTGGCAGATTTGTCAGCCTCTTCTCTCAAGAAGGAAGACTCAGTGTCTGCTAAAGATCATGGAATGGGTTATGTTCAAAAGAAGAACCGAATACATTACTCGGGACCGTTAGTGCCTCCAGGAGGAACCATTGAAGAGATGCTGAAAGAGCACGAGAGACAAATCCAGCAAGCTTTTCGAAAGGCACGAATCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGCTTTGA 1935 44.6 MGCICSRDSSEPEDSSHKESEIEKDLNKSSVQLVAPSPSKGEDLLLEIQLSRQASKINGGSVHKTKANGGSVRRPKEDDESVNKSLKATKSNNDNASAGRKQPDFFRFASLSKGAEAEHVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLFHGLEHCHSRGVLHRDIKGSNLLIDNNGVLKIGDFGLATFFQADQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVTKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFSAQGDISIKVHPIAKKTNAKYIPQEDSEPSRVVQSRFAHSTSMVHPSIAGSWSKPTGASRNFVELKTQKSQMHQLVADLSASSLKKEDSVSAKDHGMGYVQKKNRIHYSGPLVPPGGTIEEMLKEHERQIQQAFRKARIDKAKTNKSYGDQL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47923657 47928034 + Lag0039663.1 Lac2g3025 600289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g3025 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g3025 644 ProSitePatterns Protein kinases ATP-binding region signature. 153 176 IPR017441 GO:0005524(InterPro)
Lac2g3025 644 MobiDBLite consensus disorder prediction 10 26 - -
Lac2g3025 644 MobiDBLite consensus disorder prediction 460 485 - -
Lac2g3025 644 MobiDBLite consensus disorder prediction 460 490 - -
Lac2g3025 644 CDD STKc_CDK9_like 147 431 - -
Lac2g3025 644 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Lac2g3025 644 ProSiteProfiles Protein kinase domain profile. 147 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g3025 644 SUPERFAMILY Protein kinase-like (PK-like) 140 439 IPR011009 -
Lac2g3025 644 FunFam probable serine/threonine-protein kinase At1g54610 230 471 - -
Lac2g3025 644 Pfam Protein kinase domain 147 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g3025 644 Coils Coil 449 469 - -
Lac2g3025 644 Gene3D Transferase(Phosphotransferase) domain 1 230 471 - -
Lac2g3025 644 SMART serkin_6 147 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g3025 644 Coils Coil 615 635 - -
Lac2g3025 644 FunFam probable serine/threonine-protein kinase At1g54610 134 229 - -
Lac2g3025 644 MobiDBLite consensus disorder prediction 70 85 - -
Lac2g3025 644 MobiDBLite consensus disorder prediction 1 35 - -
Lac2g3025 644 MobiDBLite consensus disorder prediction 56 99 - -
Lac2g3025 644 PANTHER CELL DIVISION PROTEIN KINASE 146 431 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2098 Lac-Chr13:30856801 Lac2g3025 Lac-Chr2:47923657 1.20E-154 dispersed
Lac2g3025 Lac-Chr2:47923657 Lac5g2461 Lac-Chr5:43197045 1.60E-181 dispersed
Lac2g3025 Lac-Chr2:47923657 Lac3g2293 Lac-Chr3:31237655 1.50E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86043 PF00069 Pkinase 5.20E-70 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g3025 K08819 - csv:101208709 1160.59