Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g3066 | ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCACAGGCAAGTGACCTTTTGCAAGCGCCGAGCTGGGCTCCTCAAGAAGGCCAAGGAGCTGTCTGTGCTGTGCGATGCTGAAATTGGAGTTTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACAAGTAGGAATCAGCCACCAGACCCACCAATTGAGAACCAAACTCTGGAAGTAAAGGAGGAGGTCAAGAGGCTGAAACAAGAAATTGATGTCCTAAAGGGTCTCAGGAATGCTTTTGGAGGAGGAGCCGAAGGATTAATGACATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCATTGAGGAACCAGGAATTAATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGAGGAAAGCATTAGCAACACAACTAACATTGAACCTGTGAATATTAATACTAACTTTCAATATCCACTAACTATACAGGATGACTTATTTCAGCTTTGCACTTGA | 621 | 43.0 | MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMKHTSRNQPPDPPIENQTLEVKEEVKRLKQEIDVLKGLRNAFGGGAEGLMTLDELDMFEKQLEIWICQVRSTKMKFMCEEIEALRNQELILKAANKYLHDKMEESISNTTNIEPVNINTNFQYPLTIQDDLFQLCT | 206 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 48615683 | 48621517 | - | Lag0039704.1 | Lac2g3066 | 600330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g3066 | 206 | Coils | Coil | 88 | 108 | - | - | |
| Lac2g3066 | 206 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 180 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac2g3066 | 206 | SUPERFAMILY | SRF-like | 1 | 77 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | Pfam | K-box region | 86 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lac2g3066 | 206 | Gene3D | - | 15 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lac2g3066 | 206 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Lac2g3066 | 206 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Lac2g3066 | 206 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 56 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g3066 | Lac-Chr2:48615683 | Lac4g1844 | Lac-Chr4:37649297 | 7.90E-29 | dispersed | |
| Lac2g3066 | Lac-Chr2:48615683 | Lac12g1856 | Lac-Chr12:35022565 | 4.70E-29 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23535 | PF01486 | K-box | 1.50E-17 | No_clan | Lac | TF |
Pathway information