Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g3082 | ATGAAGTATTATCAGCAAGAATCGGCAAAGCTGCGCCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGATTCCTTGAGTGCTCTTACAGTCAAAGAGCTCAAGCAACTTGAGAATAGGCTTGAAAGAGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTACCAACAGAAAAGGGAGATCGAGCTGGAAAATGAGAATGTGTGTATTAGAACCAAGATAGCAGAGGTGGAGAGGCTTCAACAAGCAAACATGGTGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCAAATATGATGGAAGCTGGTGGAGCTGTCACTTTCTCTCATCAAGACAAGAAGATGCTTCATCTTGGTTACATTTTGGTCCCTGAGTTTTCAAACTCAACAAAATTACCCCTGAGGTTTAAGATAACTGCAAAATGGATGGCAGTGACCAAATTGCTCCCTATCTCAAACCTCAGGGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACATCACAGCTCGTTAG | 606 | 43.56 | MKYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYQQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEAGGAVTFSHQDKKMLHLGYILVPEFSNSTKLPLRFKITAKWMAVTKLLPISNLRESVAGRLEGANSVLQQNWEQNCHITAR | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 48895950 | 48900484 | + | Lag0039720.1 | Lac2g3082 | 600346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g3082 | 201 | Coils | Coil | 38 | 58 | - | - | |
| Lac2g3082 | 201 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 4 | 107 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Lac2g3082 | 201 | Pfam | K-box region | 2 | 85 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Lac2g3082 | 201 | Coils | Coil | 1 | 21 | - | - | |
| Lac2g3082 | 201 | ProSiteProfiles | K-box domain profile. | 1 | 91 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g3082 | Lac-Chr2:48895950 | Lac9g2248 | Lac-Chr9:41856938 | 7.50E-24 | dispersed | |
| Lac12g1566 | Lac-Chr12:29681300 | Lac2g3082 | Lac-Chr2:48895950 | 1.30E-07 | wgd | |
| Lac13g1634 | Lac-Chr13:17648607 | Lac2g3082 | Lac-Chr2:48895950 | 4.10E-06 | wgd | |
| Lac2g3082 | Lac-Chr2:48895950 | Lac5g1668 | Lac-Chr5:33840164 | 3.10E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac2g3082 | K09264 | - | csv:101208072 | 246.514 |