Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g3120 ATGGTAACGGTGGCGGCGTCGGCTCTGACAAGGGCTCCGACGGCAGGTTGTGAAGGTGAAGGTGAAGATGAAGTTGAAGAATTCTCAAAATTAAAGCAACCGCCGAAGTTTTGCTTTTCGTTTGCAAAAAATAACCAACAAATAAACATACACACACATCAGAAATCTCCTGAGCCAGTCACTGGGAAGCAGATGCAATCCACAACTGGTGGTGCTACTGGTAGTTGCACCAGCGGCAGCGGCGGCGGCGGTGGCGCTGGAAGTGGAAGTGGACTCGCTCGTTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCCACTCAAGCCCAATCAGTGCTTGACTCAGCTTCTCGCCGGGACCTCTGCGCCGGATCAGGGCTTGTTCGACCCCAATCCCTCCGCCGCCTTCCAAAGGCAGAATAGTTCTCCGGCGGAGTTTCTCGCCGCCTCTGGAATTGGGGACGGATTTTACTCTAACTATGCTATCAATTCCTCATCCAGTCTCGAGATCTCTCCCACCTCCAAGCGGGCCAGAGAAGTCGAGGCCCAAAACTTCCCGGCCAAATTTTCACATCAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAGATGGAGAAGCTATTGGAGGACTCTGTGCCCTGCCGGGTGAGGGCCAAACGTGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGGAGGACTAAAATTAGTGATAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATACCTTCAAAAGCAGATTCAGGTTGAAGGAAGAACGCTACAGCAGCCTGCAGAAATCGCCGTTCCACGATCCGTGTAA 924 52.38 MVTVAASALTRAPTAGCEGEGEDEVEEFSKLKQPPKFCFSFAKNNQQINIHTHQKSPEPVTGKQMQSTTGGATGSCTSGSGGGGGAGSGSGLARFRSAPAAWLEALLEDEEEDPLKPNQCLTQLLAGTSAPDQGLFDPNPSAAFQRQNSSPAEFLAASGIGDGFYSNYAINSSSSLEISPTSKRAREVEAQNFPAKFSHQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKYLQKQIQVEGRTLQQPAEIAVPRSV 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49428396 49432410 - Lag0039758.1 Lac2g3120 600384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g3120 307 SMART finulus 240 290 IPR011598 GO:0046983(InterPro)
Lac2g3120 307 MobiDBLite consensus disorder prediction 52 91 - -
Lac2g3120 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 292 IPR036638 GO:0046983(InterPro)
Lac2g3120 307 CDD bHLH_AtbHLH_like 239 290 IPR045239 -
Lac2g3120 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 284 IPR011598 GO:0046983(InterPro)
Lac2g3120 307 Pfam Helix-loop-helix DNA-binding domain 240 285 IPR011598 GO:0046983(InterPro)
Lac2g3120 307 MobiDBLite consensus disorder prediction 1 29 - -
Lac2g3120 307 MobiDBLite consensus disorder prediction 52 84 - -
Lac2g3120 307 Gene3D - 235 301 IPR036638 GO:0046983(InterPro)
Lac2g3120 307 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 119 289 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g3120 Lac-Chr2:49428396 Lac9g2847 Lac-Chr9:46458351 2.70E-25 dispersed
Lac2g3120 Lac-Chr2:49428396 Lac3g1335 Lac-Chr3:11778860 1.00E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23537 PF00010 HLH 1.30E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g3120 - - - 0.0