Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g3120 | ATGGTAACGGTGGCGGCGTCGGCTCTGACAAGGGCTCCGACGGCAGGTTGTGAAGGTGAAGGTGAAGATGAAGTTGAAGAATTCTCAAAATTAAAGCAACCGCCGAAGTTTTGCTTTTCGTTTGCAAAAAATAACCAACAAATAAACATACACACACATCAGAAATCTCCTGAGCCAGTCACTGGGAAGCAGATGCAATCCACAACTGGTGGTGCTACTGGTAGTTGCACCAGCGGCAGCGGCGGCGGCGGTGGCGCTGGAAGTGGAAGTGGACTCGCTCGTTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGGAGGAGGACCCACTCAAGCCCAATCAGTGCTTGACTCAGCTTCTCGCCGGGACCTCTGCGCCGGATCAGGGCTTGTTCGACCCCAATCCCTCCGCCGCCTTCCAAAGGCAGAATAGTTCTCCGGCGGAGTTTCTCGCCGCCTCTGGAATTGGGGACGGATTTTACTCTAACTATGCTATCAATTCCTCATCCAGTCTCGAGATCTCTCCCACCTCCAAGCGGGCCAGAGAAGTCGAGGCCCAAAACTTCCCGGCCAAATTTTCACATCAGCTGAAAAGGGAAGGAAGTGGAGTTTCGAGTTTGATAGACATGGAGATGGAGAAGCTATTGGAGGACTCTGTGCCCTGCCGGGTGAGGGCCAAACGTGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGGAGGACTAAAATTAGTGATAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATACCTTCAAAAGCAGATTCAGGTTGAAGGAAGAACGCTACAGCAGCCTGCAGAAATCGCCGTTCCACGATCCGTGTAA | 924 | 52.38 | MVTVAASALTRAPTAGCEGEGEDEVEEFSKLKQPPKFCFSFAKNNQQINIHTHQKSPEPVTGKQMQSTTGGATGSCTSGSGGGGGAGSGSGLARFRSAPAAWLEALLEDEEEDPLKPNQCLTQLLAGTSAPDQGLFDPNPSAAFQRQNSSPAEFLAASGIGDGFYSNYAINSSSSLEISPTSKRAREVEAQNFPAKFSHQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKYLQKQIQVEGRTLQQPAEIAVPRSV | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 49428396 | 49432410 | - | Lag0039758.1 | Lac2g3120 | 600384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g3120 | 307 | SMART | finulus | 240 | 290 | IPR011598 | GO:0046983(InterPro) | |
Lac2g3120 | 307 | MobiDBLite | consensus disorder prediction | 52 | 91 | - | - | |
Lac2g3120 | 307 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 237 | 292 | IPR036638 | GO:0046983(InterPro) | |
Lac2g3120 | 307 | CDD | bHLH_AtbHLH_like | 239 | 290 | IPR045239 | - | |
Lac2g3120 | 307 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 234 | 284 | IPR011598 | GO:0046983(InterPro) | |
Lac2g3120 | 307 | Pfam | Helix-loop-helix DNA-binding domain | 240 | 285 | IPR011598 | GO:0046983(InterPro) | |
Lac2g3120 | 307 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lac2g3120 | 307 | MobiDBLite | consensus disorder prediction | 52 | 84 | - | - | |
Lac2g3120 | 307 | Gene3D | - | 235 | 301 | IPR036638 | GO:0046983(InterPro) | |
Lac2g3120 | 307 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 119 | 289 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g3120 | Lac-Chr2:49428396 | Lac9g2847 | Lac-Chr9:46458351 | 2.70E-25 | dispersed | |
Lac2g3120 | Lac-Chr2:49428396 | Lac3g1335 | Lac-Chr3:11778860 | 1.00E-27 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23537 | PF00010 | HLH | 1.30E-10 | No_clan | Lac | TF |
Pathway information
