Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0015 ATGATGATGCAACACCATAGAGATAGGGTTAAGTTGGTACTTAAAATACATACAAAACAACCACCTCCCTGCACTGCACAGGCACAGCGCAGCGCAGCAGACAGCACTGCCCATATTTTATATTTATATCGGCTGCGCCAGAGCCACCTAGTTAGTTACGCAAACGCTGTTGAAGAAGTTGCTGAGTTTCTGAGGATGTCCCTTCCAACCCACCCCTTGCTCTTGTTTTCTTTCTCTGTGGCCTCTTGTCTCCTGAGTCCTGTTGAGTTGAGATTTGAGACCCCAGGCCCAAGCAAAGGAAGGTCGCAAAAGGGGCGACAGGTTGCATTGTTTGTAGTCGTGTACCCTACACATACACATATACACAAACACATACACTACGCTAGCACTAGCGTTAGCACTAAATATCCAATTCCGCAAATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATCGTGGGGGGAGGCGGCGGTGCACCTCTCCCAGCACCACTACCGCCCTACTCGCTGCGGCCCAGGGAGTTGGGACTGGGAGGCCTGGAGGACTTGTTCCAGGCTTACGGTATCAGGTACTACACTGCCGCTAAAATTGCGGAACTCGGTTTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGCTGGGAGCTTCTGGTCGGTGAGAGGTACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGACTCCTCAAGGCGCCGTCACGTCTTGTCCAACGACACCACTACCAACGTAGTCCTCGATGCCCTTTCTCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGGAGCGGAGGAGGAGGAACGTGGGAGGCAGTTGCAGCGGCTGAAATCAGGAAGAAGCAGCGGAGGAGAAATGGATCAAAGAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAAAACGAGGGAGCTGGGGACGAGGAGGATATTATGGAAGTCAGCGAGAGACAGCGAGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGAAAAAAGAACGGCCTGGACTATCTCTTCCACCTCTATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGTGGAGAAAAATGCCCTACGAAGGTGACGAACCAGGTGTTTAGATATGCGAAGAAAGCGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCCTTGCATTGTCTGGACGAGGAAGCGTCAAACGCATTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCGCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATTTGGTATGTGCCTACCAAACTCCGACAACTCTGCCACACCGAGCGCAACAGTGCCACAGCCTCCACCGCGGCTGCTGCCGATCACTTAACTTTTTAA 1578 52.41 MMMQHHRDRVKLVLKIHTKQPPPCTAQAQRSAADSTAHILYLYRLRQSHLVSYANAVEEVAEFLRMSLPTHPLLLFSFSVASCLLSPVELRFETPGPSKGRSQKGRQVALFVVVYPTHTHIHKHIHYASTSVSTKYPIPQMDPEALSATLFKWDPRGIVGGGGGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWELLVGERYGIKAAVRAERRRLDDEIDSSRRRHVLSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGTWEAVAAAEIRKKQRRRNGSKKKQVMVMEEDHDENEGAGDEEDIMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHTERNSATASTAAAADHLTF 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 184959 187571 + Lag0033543.1 Lac3g0015 600437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0015 525 MobiDBLite consensus disorder prediction 317 345 - -
Lac3g0015 525 Coils Coil 245 265 - -
Lac3g0015 525 Gene3D Protein LEAFY 351 519 IPR038276 -
Lac3g0015 525 Pfam Floricaula / Leafy protein SAM domain 183 258 IPR035079 -
Lac3g0015 525 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 351 513 IPR035209 GO:0003677(InterPro)
Lac3g0015 525 PANTHER PROTEIN LEAFY 141 519 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0015 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0015 . 141 518 Orphan Transcription Factor Family AT5G61850 69.3 4.2e-125 445.7
Lac4g1778 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 4.0e-61 231.9
Lac5g2421 . 1 109 Orphan Transcription Factor Family AT1G06040 68.8 7.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23538 PF17538 C_LFY_FLO 4.40E-108 CL0123 Lac TF