Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0017 ATGTTGTGTTCATCATCGGACACAAATTGCTTTATTAGGAAACAGACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAAAACACTTGTGCAAAGTGCCGCTGTGTGATCCCTTCCAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAAATGTCAAAATCTATTGGTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAGAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCCGATCATTTTGGTCCAATTCCTGCTGAAAATGACCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGGCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCAGGCCAGTCAAATAATGGTGCTCAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACGAGCAAGGATCAGTCTTTTGACCAGAAGTTTGAAAAATCAAACAAAGCGCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAGAAGCGTTCCTCGTATGCTCCAGAGAAGGGTTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAGGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGTCGGTGGAAGTGGAACAAAACCCCACCAACGAGCAAGAAACCAGTTGAAACCGAAGATTCTGCTTCTGGGAAGAGGTCAAGGAGAAGAATTAGGCAATCGCATAATATGAGTGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTACTTGTCGGGAGGTAATGAGTCTGCCAATCACTACGCCTTGTGCCCATAACTTTTGCAAGACATGCTTGGAAGGTGCTTTTGTGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGGCCCTTAGATCCCAAAAGAATGTCATGAGTTGTCCTTGTTGCCCGACAGATATATCTGATTTTCTACAGAATCTCCAGGTAAATAGAGAGTTATTGGATGTGATCGAGTCGTTGAAAAGTAAGATTGAAGAAGGGGATGCATCATCTGAGAAGCTCTGTGAAGAAGAGATAGAAGGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAAGATGGAAGCAGCAGTCCTGTGGAAACAAGGAAGCGAGCAAAGGCGGTGGTTAATGGTGGGGAGGAAAATGCTGTGGGCGGGAATGGAGATGATTCACCCTCAAGTCCCCTCCACGTGGATGATTTGGAATGA 1596 45.3 MLCSSSDTNCFIRKQTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKMSKSIGSGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAIPELKKATDITERKEGPSWDFDEKDSRWKWNKTPPTSKKPVETEDSASGKRSRRRIRQSHNMSVRERLLKEFSCLTCREVMSLPITTPCAHNFCKTCLEGAFVGKTFLRERSSGGRALRSQKNVMSCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDASSEKLCEEEIEGEEEEEEEEEEGKDGSSSPVETRKRAKAVVNGGEENAVGGNGDDSPSSPLHVDDLE 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 198248 203300 + Lag0033545.1 Lac3g0017 600439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0017 531 ProSiteProfiles YDG domain profile. 131 279 IPR003105 -
Lac3g0017 531 ProSiteProfiles Zinc finger RING-type profile. 375 431 IPR001841 -
Lac3g0017 531 Pfam Zinc finger, C3HC4 type (RING finger) 14 41 IPR018957 GO:0046872(InterPro)
Lac3g0017 531 SUPERFAMILY RING/U-box 368 456 - -
Lac3g0017 531 MobiDBLite consensus disorder prediction 462 531 - -
Lac3g0017 531 SUPERFAMILY PUA domain-like 105 300 IPR015947 -
Lac3g0017 531 SMART ring_2 375 431 IPR001841 -
Lac3g0017 531 SMART ring_2 3 41 IPR001841 -
Lac3g0017 531 SMART G9a_1 126 283 IPR003105 -
Lac3g0017 531 Pfam SAD/SRA domain 133 282 IPR003105 -
Lac3g0017 531 ProSiteProfiles Zinc finger RING-type profile. 2 42 IPR001841 -
Lac3g0017 531 ProSitePatterns Zinc finger RING-type signature. 390 399 IPR017907 -
Lac3g0017 531 MobiDBLite consensus disorder prediction 287 333 - -
Lac3g0017 531 MobiDBLite consensus disorder prediction 287 360 - -
Lac3g0017 531 Gene3D - 102 298 IPR036987 -
Lac3g0017 531 MobiDBLite consensus disorder prediction 466 489 - -
Lac3g0017 531 Pfam RING-type zinc-finger 375 404 IPR027370 -
Lac3g0017 531 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 102 297 - -
Lac3g0017 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Lac3g0017 531 SUPERFAMILY RING/U-box 13 53 - -
Lac3g0017 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 463 IPR013083 -
Lac3g0017 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 12 484 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0017 Lac-Chr3:198248 Lac7g0527 Lac-Chr7:4203567 2.10E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0017 K10638 - csv:101220457 909.442