Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0024 ATGGCCTCCTCCGAGGTTTCCATCAAGCCCAATTCCGCTTCCACTAAAGACCCCTCCGATCCACCCAACACTCTCTCTGCCAGGGATGCCGATATCGCCCTCTACACCGAGCTCTGGAATGCTTGCGCCGGTCCTCTCGTTTCTGTCCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACCAATCAATTGGCGGACCAACAGATGCCTGTTTATAACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCACTTGAAGGCCGAGCCTGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATACTCTGACTGCCTCTGACACCAGTACTCACGGAGGGTTTTCGGTTTTGAGACGCCATGCTGATGAGTGTCTTCCACCACTGGACATGTCACGACAACCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTTGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAACGTCCCCTCTTCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACGATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACGGGTACTATCATTGGATGTGAAGATGTTGATCCCAATAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCAACTATTTCTCGACCGGAGAAAGTCTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCCCTTCCAATGACTAGACCTAAAAGGCCTCGATCGAACATAGTACCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATTGATGGCAATGAGTCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGCTGGATACCTCCAGGAAGGAGTGAGCCAACTTACGCAGATCTTTTGTCAGGGTTTGGAACTAATATTGATTCATCCCGCGGTGTCCGAACTGCCATGGGAGATCCAGCAGTAGTAACTGCTAATTCGATCAGAAAGCATGCAATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCCCATGGTCTGTCTTACCTTCTGGTCTCTCGCTCAACCTGGTCGACTCTAGTCAGAAGGGCCATATTCAAGCTGGTGACTTACCTTATCAAGTGAGAGGAAATGCTACCTTTAATGGCTTTGGTGATCATTCCATGGTCCATTGTCATAGAATTGAGCAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCATTCAACTGAACTGATGTCAAAACCTATGTTATTTCAGAACCAAGATATTCTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAAAATCCTGCTATTCCAGACCCTACAGGATTGAATAGAAATATGATGAATGAGGCAGATGTTATGCATCCCAATATACATCAAATCCATTCGAACGAGTCTGACCTCAAGTCTGAACTATCTAGGGGTTCAAAGTTGGCTGATAAATCCCTTGCCATCAATGAGCCTGATAAGTCGCAGCAAACATGCACACAAAACTCGAAGGATCAGAGTAAATCACAGGGTGGTTCAACGAGGAGTTGTACAAAGGTTCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGAGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACTGATGATGAGGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTATTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCTGTTGAAGATGAAGAAGCAAAAGAGATTAAAAGTCAGGCAGTACCTTCGGTGTCAGCACCCGAGAGTTCTTCTTAG 2454 45.56 MASSEVSIKPNSASTKDPSDPPNTLSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQLADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDVDPNRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNIVPTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDGNESDAAEKSVMWPPSLDDEKIDVVSTSKKHGADSWIPPGRSEPTYADLLSGFGTNIDSSRGVRTAMGDPAVVTANSIRKHAMDQDGKFNFLGGSPWSVLPSGLSLNLVDSSQKGHIQAGDLPYQVRGNATFNGFGDHSMVHCHRIEQPHGNWLMPPPSSHFDYPVHSTELMSKPMLFQNQDILKPKDGNCKLFGISLIKNPAIPDPTGLNRNMMNEADVMHPNIHQIHSNESDLKSELSRGSKLADKSLAINEPDKSQQTCTQNSKDQSKSQGGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIIIYTREEVQKMNPGSLNLKGDENPSVEDEEAKEIKSQAVPSVSAPESSS 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 237205 241422 + Lag0033552.1 Lac3g0024 600446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0024 817 CDD B3_DNA 118 215 IPR003340 GO:0003677(InterPro)
Lac3g0024 817 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677(InterPro)
Lac3g0024 817 MobiDBLite consensus disorder prediction 667 693 - -
Lac3g0024 817 Pfam B3 DNA binding domain 118 216 IPR003340 GO:0003677(InterPro)
Lac3g0024 817 FunFam Auxin response factor 115 217 - -
Lac3g0024 817 ProSiteProfiles PB1 domain profile. 691 775 IPR053793 -
Lac3g0024 817 MobiDBLite consensus disorder prediction 780 817 - -
Lac3g0024 817 FunFam Auxin response factor 278 350 - -
Lac3g0024 817 FunFam Auxin response factor 686 780 - -
Lac3g0024 817 Gene3D - 687 780 - -
Lac3g0024 817 Gene3D - 116 217 IPR015300 -
Lac3g0024 817 SUPERFAMILY CAD & PB1 domains 684 768 - -
Lac3g0024 817 SUPERFAMILY DNA-binding pseudobarrel domain 117 244 IPR015300 -
Lac3g0024 817 Gene3D - 278 348 - -
Lac3g0024 817 SMART B3_2 118 217 IPR003340 GO:0003677(InterPro)
Lac3g0024 817 MobiDBLite consensus disorder prediction 1 22 - -
Lac3g0024 817 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 781 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac3g0024 817 Pfam AUX/IAA family 675 779 IPR033389 -
Lac3g0024 817 MobiDBLite consensus disorder prediction 364 389 - -
Lac3g0024 817 MobiDBLite consensus disorder prediction 1 25 - -
Lac3g0024 817 MobiDBLite consensus disorder prediction 352 389 - -
Lac3g0024 817 Pfam Auxin response factor 241 323 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3368 Lac-Chr1:53290925 Lac3g0024 Lac-Chr3:237205 6.60E-94 dispersed
Lac1g3550 Lac-Chr1:54711541 Lac3g0024 Lac-Chr3:237205 2.30E-104 dispersed
Lac3g0024 Lac-Chr3:237205 Lac6g2214 Lac-Chr6:38709954 7.30E-17 dispersed
Lac3g0024 Lac-Chr3:237205 Lac5g2249 Lac-Chr5:41182364 2.70E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23540 PF02362 B3 1.30E-19 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0024 K14486 - csv:101206845 1484.54