Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0027 GTCACTGTAAATTCTGGTGGAGTTGTTTTCTTTGCACTCTTCAATCAGCTTGGTTATGACGATAATTTTCCAAAGGAAGCAGCTGCTGTTATAAAGATATCATCTTCAAGAATGGCCACGCAATCTGAACGCCTGGGTTATGAATTTGCTAAGTGGCTTGGGGTTCAAACTCCACAGGCTAGGGTTATTCATAATTCCAGCATGGAATGGCTCCAGATAAAAGAAGCTGCAGAGAAAGCACGAGATGTTGCCTGTTTGGAGGGTGATGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTTGAATTTAGCAGATGCCTTTTTCTGATGAGCTATGTACATGGGTCTCCTTTGTTAGAAAGCTCAAATGCATTTGAATCACGGGAAATAGCTGAAAAATTAGCTACTGCCATTGGAAGGATCTTGTTATTAGACCTTGTCATCAGAAATGAAGATAGGCTCCCATGTCGTCTTCTTCGTTGGCGTGGAAATTCCGCAAATCTGCTCATAGCTGATAGAATGACGTGTGTAAATATGAATACATTTGAGGAAGCTTTTGATTCAGCTATTAAGCGATATAGACCAAAAGTTGTTACAACACTTCAAAAAGAAAGAAGGGCAACTTCAGTGGACAATAGATCAAGTTCTAATTCAGGGTTGGTATTAGATGCCTCAGAACTTTGTGATATCGTTGAATCCCCTAAATCTAGTAACCTAAGTGTAAAAAGTCAAATATCAGATGAAACAACGCCTTGTGATTTTAACATTGTGGCTATTGACTCTGGTGTTCCTCGTCGACCTCCAGCTGGAAAACGTTCTAATGACCAGTCAATTTACCCAAAGTTAGTTGAGTTGTTACTTAATAGTTCTGAGTTCTCCTCTAATCTATTACATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATTAGCTGATGCCAACTCAACTACTAATATGCAACTTACGGATATGAGTTCTATTGTCCATGAATTTCGGTATGGGTTTCGTGCTGCTCTTAGGGACTTGCAAGGATTTCACATATTTTTGCTTACACTCCACCAAAAGTTAGATAACTCATTACGAGCATTCATGAATATCATAAATAAGTTCCCCTTGGGGGAATCTGATAAAGAGGATTCAGGGGTTCCTGAGTCCCATTTGCAGGGATCTACCACTATTCATTGTTTATCCCCACGTGGTAAGGAACGAACCTCTAGTGACAGTAATATGGATGTTACAGATTCTGCTCCAAGATCATCATCAGGAAATAAAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAACTCACAAGGAAAGGCATACAAGGGAAGTGCAGAGCCCATTCATAGCCTTCGTCTAACTGCAAAACTGCGAGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCTGTTAAACTCTGCCAGGAGAACAAATTTAATACTGGGTTTTTTGAAGGCAGCGACAGTCATGGAGTTGTTGATGCTTATGAACTGAAGGTCAGACTTGAGCACATTCTTGAAAGGATTGCACTGATATCCGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACAGCTGCCTTATTTATAGGCGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAATCACTCATATTTTATGTCTCTGCTCAAATGAAATCGGCCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAAAATTTTTCAATAAGCGATAATGAAGACTCAAACATCAGCGGTATCTTTGAAGAAGCTTCTGATTTTATTGTTGACGTTGAAAAAAAGGGTGGAAAGGTCCTGGTTCATTGCTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTTAGAAAGAAATACACATTGTTAAAGGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCAAAAACATTATTAGAATTAGATCGAAGAATACATGGAAAAGTTTCCATGGAGTGGCAATCACGAAAACCAACTATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAGCTTCATCTGCAAAAATCACACAAGAAGCTATCATCTGGGAGCGTGGACAGTGCAATGACCATGGAAATACAGAAAGCATTAACAGCTCTAAAAATCAGTCGTGGCGGAAGCGTGAGCCCCACCCAGAGGCAGTCTCTTCTGATCCTGGATGAATAG 2301 40.42 VTVNSGGVVFFALFNQLGYDDNFPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSMEWLQIKEAAEKARDVACLEGDEVGEMTCSELLEALEFSRCLFLMSYVHGSPLLESSNAFESREIAEKLATAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLIADRMTCVNMNTFEEAFDSAIKRYRPKVVTTLQKERRATSVDNRSSSNSGLVLDASELCDIVESPKSSNLSVKSQISDETTPCDFNIVAIDSGVPRRPPAGKRSNDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSLADANSTTNMQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDSGVPESHLQGSTTIHCLSPRGKERTSSDSNMDVTDSAPRSSSGNKESSDLSSPLSRDNSQGKAYKGSAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTAALFIGGALAARSVYTLQHLGITHILCLCSNEIGQSDSQFPDLFEYKNFSISDNEDSNISGIFEEASDFIVDVEKKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQSLLILDE 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 262608 279600 - Lag0033555.1 Lac3g0027 600449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0027 766 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 765 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
Lac3g0027 766 MobiDBLite consensus disorder prediction 411 443 - -
Lac3g0027 766 ProSitePatterns Tyrosine specific protein phosphatases active site. 626 636 IPR016130 GO:0016311(InterPro)
Lac3g0027 766 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 605 660 IPR000387 GO:0016311(InterPro)
Lac3g0027 766 MobiDBLite consensus disorder prediction 386 401 - -
Lac3g0027 766 MobiDBLite consensus disorder prediction 376 449 - -
Lac3g0027 766 CDD DSP 540 677 - -
Lac3g0027 766 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 539 683 IPR029021 -
Lac3g0027 766 FunFam Dual specificity protein phosphatase PHS1 511 685 - -
Lac3g0027 766 SUPERFAMILY Protein kinase-like (PK-like) 1 278 IPR011009 -
Lac3g0027 766 ProSiteProfiles Dual specificity protein phosphatase domain profile. 539 684 IPR020422 GO:0006470(InterPro)
Lac3g0027 766 SMART dsp_5 539 681 IPR020422 GO:0006470(InterPro)
Lac3g0027 766 Gene3D - 119 220 IPR036940 -
Lac3g0027 766 Gene3D Protein tyrosine phosphatase superfamily 516 685 IPR029021 -
Lac3g0027 766 Pfam Dual specificity phosphatase, catalytic domain 548 680 IPR000340 GO:0016311(InterPro)
Lac3g0027 766 Pfam Actin-fragmin kinase, catalytic 5 208 IPR015275 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0027 K14165 - - csv:101220184 1375.92
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009525 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 2 1 0 1 1 1 31