Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0033 ATGGCCATCTCGAAAGATGCCCAACAATCTCTGATCCCAAGCTTTGTGTACTCTTCTGCTAAATGGGGGACATCCAGTAGTTACGAAAAGAGCTTCCCAATTATTGAAGCTCCAAAGGAGAAGATAAAGATGTACTCACCGGCCTTCTACGCAGCATGTACAGCAGGCGGCATTTTGAGTTGTGGACTTACCCACATGTCCGTCACCCCCCTCGATCTCGTCAAGTGCAATATGCAGATCGACCCAGCAAAGTACAAGAATATCTCGTCTGGTTTTGGAATTCTGCTAAAGGAGCAGGGAGTGAGAGGGTTCTTCCGGGGTTGGGTGCCGACCTTGCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTCGGATTTTACGAGTTCTTCAAGAAATACTATTCTGACATGGTTGGACCAGAGAATGCAGTAAAGTACAAAACTTTGATATACCTTGCTGGTTCAGCATCGGCAGAAGTAATTGCCGATGTCGCTCTCTGCCCCATGGAGGCCGTCAAAGTTCGCGTCCAAACTCAACCTGGTTTTGCCCGGGGTTTGTCTGATGGTCTCCCAAAGTTTGTCAAGTCTGAGGGTGCTCTTGGGCTCTACAAAGGACTGGTTCCTCTTTGGTGTCGTCAGATTCCATATACCATGATGAAATTTGCCTCTTTCGAAACAATTGTTGAGATGCTGTACAAGTACGCCATCCCAAGGCCTAAAGAGCAGTGTAGCAAATCTCTGCAGCTTGGAGTGAGCTTTGCTGGGGGGTATGTGGCCGGCGTTCTCTGTGCTGTGGTCTCACACCCGGCTGATAATTTTGTTTCTTTTCTCAACAATGCCAAGGGAGCAACCGCCGGAGATGCTGTCAGGCAGCTAGGTTTATGGGGTCTTTTTACTCGTGGCCTTCCCCTTCGGATTGTTATGATTGGAACTCTTACCGGATCTCAATGGGGAATATATGACGCATTCAAAGTTTTCGTTGGATTGCCAACAACTGGTGGCGCCGCCCCTGCTCCGGCTGCCAAAAAGTGA 1029 48.98 MAISKDAQQSLIPSFVYSSAKWGTSSSYEKSFPIIEAPKEKIKMYSPAFYAACTAGGILSCGLTHMSVTPLDLVKCNMQIDPAKYKNISSGFGILLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDMVGPENAVKYKTLIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFVKSEGALGLYKGLVPLWCRQIPYTMMKFASFETIVEMLYKYAIPRPKEQCSKSLQLGVSFAGGYVAGVLCAVVSHPADNFVSFLNNAKGATAGDAVRQLGLWGLFTRGLPLRIVMIGTLTGSQWGIYDAFKVFVGLPTTGGAAPAPAAKK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 301474 303290 + Lag0033561.1 Lac3g0033 600455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0033 342 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 34 334 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Lac3g0033 342 Pfam Mitochondrial carrier protein 50 135 IPR018108 -
Lac3g0033 342 Pfam Mitochondrial carrier protein 146 233 IPR018108 -
Lac3g0033 342 FunFam Phosphate carrier protein, mitochondrial 48 326 - -
Lac3g0033 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 145 229 IPR018108 -
Lac3g0033 342 Gene3D Mitochondrial carrier domain 47 326 IPR023395 -
Lac3g0033 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 48 132 IPR018108 -
Lac3g0033 342 SUPERFAMILY Mitochondrial carrier 51 321 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0033 Lac-Chr3:301474 Lac7g0186 Lac-Chr7:1472906 1.90E-11 dispersed
Lac11g2089 Lac-Chr11:36774677 Lac3g0033 Lac-Chr3:301474 8.40E-11 transposed
Lac12g0462 Lac-Chr12:5088383 Lac3g0033 Lac-Chr3:301474 4.90E-83 transposed
Lac8g2062 Lac-Chr8:39120965 Lac3g0033 Lac-Chr3:301474 1.10E-142 transposed
Lac3g0033 Lac-Chr3:301474 Lac8g0058 Lac-Chr8:899108 4.00E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0033 K15102 - csv:101220423 592.808