Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0076 ATGTTAAAATGCAGAGCTGGAAGCAGAGAAACGAATCCTGAGGGCTGTTACCTTATCTCAACTCTTTTCGGAGTTGTGTGTCTCTCACCCTTTTTTCCATCTTCATCACTTGAAAATTTCTCACATTTTTCTTCCTCAATCAAATCCCTTCACCACTCCATCCTCCGATCAAATCCCTTGCAGCATTTGGCCGACCCCTACTACAACCGCCGCCTGCGCCATTATCTCCGCCGTCGCCGGCCGATGGAGAGCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCTGACGAGGACGTGCGTATGATCTCCGCCGAGGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCAGCGGCCATCACCAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGACGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGTCGGAGCAACTGCTAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCCGCGGGGGCTCCGGGAGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCCCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGACCGCGGCGGAGGATGGCTCTTACGCCAGTGGGGGCAGCAGCGGGCAGGGAAATCTTGATGGTCAGAGCTAA 906 54.42 MLKCRAGSRETNPEGCYLISTLFGVVCLSPFFPSSSLENFSHFSSSIKSLHHSILRSNPLQHLADPYYNRRLRHYLRRRRPMESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 506713 511737 + Lag0033604.1 Lac3g0076 600498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0076 301 FunFam Nuclear transcription factor Y subunit gamma 106 215 - -
Lac3g0076 301 MobiDBLite consensus disorder prediction 83 104 - -
Lac3g0076 301 Gene3D Histone, subunit A 105 215 IPR009072 GO:0046982(InterPro)
Lac3g0076 301 Pfam Core histone H2A/H2B/H3/H4 129 200 IPR007125 GO:0003677(InterPro)
Lac3g0076 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 111 221 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac3g0076 301 SUPERFAMILY Histone-fold 109 209 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0076 Lac-Chr3:506713 Lac3g2661 Lac-Chr3:41119549 1.00E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23544 PF00808 CBFD_NFYB_HMF 3.90E-17 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0076 - - - 0.0