Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0076 ATGTTAAAATGCAGAGCTGGAAGCAGAGAAACGAATCCTGAGGGCTGTTACCTTATCTCAACTCTTTTCGGAGTTGTGTGTCTCTCACCCTTTTTTCCATCTTCATCACTTGAAAATTTCTCACATTTTTCTTCCTCAATCAAATCCCTTCACCACTCCATCCTCCGATCAAATCCCTTGCAGCATTTGGCCGACCCCTACTACAACCGCCGCCTGCGCCATTATCTCCGCCGTCGCCGGCCGATGGAGAGCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCTGACGAGGACGTGCGTATGATCTCCGCCGAGGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCAGCGGCCATCACCAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGACGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGTCGGAGCAACTGCTAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCCGCGGGGGCTCCGGGAGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCCCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGACCGCGGCGGAGGATGGCTCTTACGCCAGTGGGGGCAGCAGCGGGCAGGGAAATCTTGATGGTCAGAGCTAA 906 54.42 MLKCRAGSRETNPEGCYLISTLFGVVCLSPFFPSSSLENFSHFSSSIKSLHHSILRSNPLQHLADPYYNRRLRHYLRRRRPMESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 506713 511737 + Lag0033604.1 Lac3g0076 600498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0076 301 FunFam Nuclear transcription factor Y subunit gamma 106 215 - -
Lac3g0076 301 MobiDBLite consensus disorder prediction 83 104 - -
Lac3g0076 301 Gene3D Histone, subunit A 105 215 IPR009072 GO:0046982(InterPro)
Lac3g0076 301 Pfam Core histone H2A/H2B/H3/H4 129 200 IPR007125 GO:0003677(InterPro)
Lac3g0076 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 111 221 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lac3g0076 301 SUPERFAMILY Histone-fold 109 209 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0076 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0076 Lac-Chr3:506713 Lac3g2661 Lac-Chr3:41119549 1.00E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0076 . 116 300 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Lac3g2661 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.2e-52 204.1
Lac12g0292 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.5e-52 203.8
Lac3g2661 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.1e-54 209.9
Lac12g0292 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.0e-49 191.8
Lac3g0076 . 116 214 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 3.2e-42 169.5
Lac3g2661 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 6.4e-61 231.5
Lac12g0292 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.2e-52 202.6
Lac3g0076 . 116 274 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 7.8e-51 198.0
Lac3g0076 . 116 273 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 2.1e-37 153.3
Lac3g0076 . 116 300 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Lac3g2661 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.7e-49 193.7
Lac12g0292 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.9e-49 193.0
Lac12g0292 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.9e-64 243.0
Lac3g2661 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 7.2e-51 198.0
Lac3g0076 . 116 239 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.1e-50 194.9
Lac13g0807 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.0 9.5e-60 228.0
Lac9g2749 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.5 3.0e-53 206.5
Lac6g0758 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.1e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23544 PF00808 CBFD_NFYB_HMF 3.90E-17 CL0012 Lac TF