Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0086 ATGGCCGCCACGAATACCAATGTCGCCAGCGGCGTCGACGACCGCGTTCTGGCCACTGCTCAGCAGATCGTCAAGAGCCTCAATACCCCTAAGGAGGTTCGTGAGGACATGCTCTTGATTCTCTCCAGTTTTGATAATCGCCTTTCCAGTATCGGTAGTATGATCGGCAGTGACGACTCCAACACCAAGAACGATACGTTGGACGCCGCGGAGAAGGTGATTCTTCGTTGGGACCCTAATTCCGATGTGTCCAGACGGTCGCTTAATTGGGAGGACTCGCCGGACGAGGCGGCTGAGTATTTGTCGGCGGTGGATGATATTCTCCGGCTACTGGAAGACCTTTCCGTTGGGTCCGAGTCGACTGAGATCGTAGACCGGGCCGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGTGAATTCCGCCATATCCTGATCCAGAGCACAGTCCCTCTCGACGCCGAGCGGCTCTACGGCTCGATCCGAAGAGTTCACCTCTCGTTTGCGTCCAATTACAGTGAAATTGACGATGAATTCGAGAGTTTCGGCGAGGAAAGTCGCAGTTCCGGGCGATTCCATGAGCGAGGTGCGACAATTGGAGAAGATTCTTGGGTCGATTTGATCCATCCCGATGCGGCTGTTGATCTGTCGGAGATTGCGGACCGTATGATTCGTGCCGGCTACGAAAAGGAGTGTGTTCAAGTCTATAGCACCGTTCGTCGTGATGCTTTGGACGAGTGCTTGGCGATTCTTGGCGTCGAACGGCTCAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTTTTGGATGAGAAGATGAAGAAATGGATTCAGGCCGTCAAAATTACAGTCCGGTTGATTTTGGACGGAGAGAAGAGGCTCTGTGATCAGATTTTCAATGGCGCCAATGAATCCAAGGAGATTTGCTTTAACGAAACGGCAAAAGGGTGTGTAATGCAGCTCTTGAATTTTGGTGAGGCAGTGGCTATTGGCAAGAGGTCACCGGAGAAGCTGTTCCGAATCTTGGATATGTATGATGCTTTGGCCGGCGTTTTGCCTGACTTGGAAGCCATGGTTTCCGATGAGTTTCTGATCAGTGAAGCGCATGGAGTGTTGTCTGGACTGGGAGAAGCCGCCACGGGGACATTTGCAGAGTTTGAGAATGCTATTGAAAGCGAAAATTCGAAGAAAGCAATGCAAAATGCAGAGATTCACCCACTTATTCGATATGTAATGAATTATGTGAGATTGCTGGTTGATTACAGTAAGACGATGAACTCTCTTTTAGAAGATGAGGAAGTACAAGACTTGCGGAATGTGAACGATAATGACAATGATCTGCAGTTGAAAAGCACGTCGGCTTTAGCTCGTAGATTGTTAATGCTGTTATCATCGTTGGAATCCAATCTTGTGGATAAATCAAAACTTTATGAGGATGTTGCTATGCAGTTCATATTTCTAATGAACAATATACTGTATATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGCGATAACTGGCTTCGCAGGCATAGCGGCCAAATTCGCCAATATGAAACAAGTTACCTTAGAGCTTCTTGGAGCAAAGTTTTGTCTTGCTTAAAGGATGAAGGTATTGGTGGGAGCACAAGCAATGCCTCCAAGGTAGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCAGGTTTTGAAGAAATCTGCAGGGTTCAGACATCTTGGAAGGTATCAGATGCTCAACTGCGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATTCCAGCGTATCGCTCCTTCTTGGGAAGGTTTAGAAATCAGTTAGAGAGCGGAAGGCATTCTGGGAAGTACATAAAGTACACACCAGAGGACTTAGAGAACTCTCTATCAGATTTGTTTGAGGGATCGCCTGCTGTTTCACATCACATGCGAAGAAAGGGTACTTGA 1956 47.55 MAATNTNVASGVDDRVLATAQQIVKSLNTPKEVREDMLLILSSFDNRLSSIGSMIGSDDSNTKNDTLDAAEKVILRWDPNSDVSRRSLNWEDSPDEAAEYLSAVDDILRLLEDLSVGSESTEIVDRAENAIQMAMCRLESEFRHILIQSTVPLDAERLYGSIRRVHLSFASNYSEIDDEFESFGEESRSSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRAGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILDGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPDLEAMVSDEFLISEAHGVLSGLGEAATGTFAEFENAIESENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEVQDLRNVNDNDNDLQLKSTSALARRLLMLLSSLESNLVDKSKLYEDVAMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRHSGQIRQYETSYLRASWSKVLSCLKDEGIGGSTSNASKVALKEKFKNFNAGFEEICRVQTSWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPEDLENSLSDLFEGSPAVSHHMRRKGT 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 577593 579548 + Lag0033614.1 Lac3g0086 600508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0086 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 639 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac3g0086 651 Pfam Exocyst complex component Exo70 N-terminal 66 148 - -
Lac3g0086 651 Gene3D Exocyst complex component Exo70 73 645 - -
Lac3g0086 651 Pfam Exo70 exocyst complex subunit C-terminal 275 634 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac3g0086 651 SUPERFAMILY Cullin repeat-like 65 637 IPR016159 -
Lac3g0086 651 FunFam Exocyst subunit Exo70 family protein 83 644 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2533 Lac-Chr12:42209252 Lac3g0086 Lac-Chr3:577593 1.90E-122 dispersed
Lac3g0086 Lac-Chr3:577593 Lac4g0533 Lac-Chr4:12131319 9.00E-119 dispersed
Lac13g0596 Lac-Chr13:4412545 Lac3g0086 Lac-Chr3:577593 2.30E-98 transposed
Lac1g2316 Lac-Chr1:44527486 Lac3g0086 Lac-Chr3:577593 8.20E-90 transposed
Lac4g3080 Lac-Chr4:48924831 Lac3g0086 Lac-Chr3:577593 4.40E-36 transposed
Lac7g1288 Lac-Chr7:12358395 Lac3g0086 Lac-Chr3:577593 3.80E-96 transposed
Lac8g1970 Lac-Chr8:38146116 Lac3g0086 Lac-Chr3:577593 5.10E-91 transposed
Lac10g0582 Lac-Chr10:4476452 Lac3g0086 Lac-Chr3:577593 6.70E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0086 K07195 - csv:101205970 1114.75