Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0141 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAACGAAATGGCTGATTGATCCAAAACATCTCTTTGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGAGAAACGGCTGATGAGGTTGCAAAGAAAGAGGCCCGGTTTGCTCGAGAGGTTGCGATGTTGTCTAAAGTACAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACTGAGCTATTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGCCCACGGTGCTTGGACACACGTGTGGCAGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGCCTGCACTCTCATGGCATCATACATCGTGATCTGAAACCTGAGAACCTACTGTTGACTGCAGATCACAAAACAGTCAAATTAGCGGATTTTGGTTTGGCAAGAGAAGAGTCATTGACGGAGATGATGACTGCGGAGACGGGGACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTGAGGCAGGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTGTTATGGGAACTGCTACATAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAGGCAGCATATGCAGCTGCTTTTAAGAATGTAAGGCCTAGCGCAGAGAATCTTCCAGAGGAACTGGCCGTTGTTCTAACATCGTGCTGGCAAGAGGATGCAAATGCTCGTCCAAACTTCACCCAAATTATCCAAATGCTTCTCAATTACCTTTATACCATTGCACCGCCCGAGCCAATGATTCCTTCCCGAGTTTTCACTTCTGAGAACACGGTGTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAAGCCCAGAGGTGGTTTTAGTTATGTAGTAACACAGCCTAAGCCTTGCATCATCATGGTAGATTGGAAGGATCATCCTGATGCTTGGATGTAA 1113 45.46 MEAGSRFYSATDEFRLETKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAVVLTSCWQEDANARPNFTQIIQMLLNYLYTIAPPEPMIPSRVFTSENTVFPPESPGTSSLMAVRDDSGDTPKAKMENKPRGGFSYVVTQPKPCIIMVDWKDHPDAWM 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 987103 989900 - Lag0033669.1 Lac3g0141 600563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0141 370 FunFam Kinase suppressor of Ras 1 16 106 - -
Lac3g0141 370 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Lac3g0141 370 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 SUPERFAMILY Protein kinase-like (PK-like) 18 316 IPR011009 -
Lac3g0141 370 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Lac3g0141 370 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Lac3g0141 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 PANTHER SERINE-THREONINE PROTEIN KINASE 21 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac3g0141 370 CDD STKc_MAP3K-like 33 287 - -
Lac3g0141 370 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0141 370 MobiDBLite consensus disorder prediction 315 340 - -
Lac3g0141 370 FunFam serine/threonine-protein kinase HT1 108 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3297 Lac-Chr10:46829773 Lac3g0141 Lac-Chr3:987103 1.60E-115 dispersed
Lac1g2891 Lac-Chr1:49823010 Lac3g0141 Lac-Chr3:987103 1.30E-85 dispersed
Lac3g0141 Lac-Chr3:987103 Lac8g0205 Lac-Chr8:2314970 5.60E-158 dispersed
Lac3g0141 Lac-Chr3:987103 Lac1g3332 Lac-Chr1:53046788 5.00E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86045 PF07714 PK_Tyr_Ser-Thr 6.10E-58 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0141 - - - 0.0