Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0157 ATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCAAGCAATGTGACAAAGCTGCTCAATGAGCTTTTGCCTCACCAAAGAGAGGATGCAGTCAACTCTCTAGCCTACGAGGCCGAGGCCCGAGTCCGAGACCCGGTCTACGGTTGCGTCGGAGCCATCTCGTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGATGCTGCGAATGCCGACCTAATTCGGTATGCATGCAACGAGATCCCTAACGCCGGGGTGAGTCATGTGGTTCAGCCAATAACCGGCCTTCGCCCTAGGGCTTTGGATCAGTATAATACAAGAGTTCTTGGCAATGAAGGTTCATCAACTGGATATTTTAACCAACACCTTCCTGCCTTCCCCATGGCTTATCCACTCCCTTGGAATGAACACTCTTCTGGAAATAACATCAATGAAGAAGGAGGGGATGCCAATATTTGA 570 48.95 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPITGLRPRALDQYNTRVLGNEGSSTGYFNQHLPAFPMAYPLPWNEHSSGNNINEEGGDANI 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1085354 1085923 + Lag0033685.1 Lac3g0157 600579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0157 189 Coils Coil 89 116 - -
Lac3g0157 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lac3g0157 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 118 - -
Lac3g0157 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3558 Lac-Chr1:54791489 Lac3g0157 Lac-Chr3:1085354 2.00E-36 dispersed
Lac3g0157 Lac-Chr3:1085354 Lac8g0240 Lac-Chr8:2655989 6.30E-57 dispersed
Lac6g2155 Lac-Chr6:37715647 Lac3g0157 Lac-Chr3:1085354 2.40E-45 transposed
Lac10g0481 Lac-Chr10:3716999 Lac3g0157 Lac-Chr3:1085354 2.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23551 PF03195 LOB 3.00E-42 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0157 - - - 0.0