Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0165 ATGCCTGTAAATTCATGGACCCTCCCCTCATCTATCCTAATCCTCTGTTTCTCATTCTTTTATCCCTTCATTCTCACAACCTCTGCCATTAACGAACAGGGTCAAGCTCTACTCACTTGGAAACTAAGTTTCAATGGATCAAACGAGGTGCTACGTAATTGGGACCCCAGCAACGAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACAAAAACAGAGAAGTAGTGGAAGTAGTTTTGAGGAACGTGAACTTACCTGGTAAGGTTCCATGGAACTTCTCTTCACTGTCGTCTTTGAACAGGCTCGCCTTGTCGGGACTGAACCTCACTGGTTCTATTCCTAAAGAGATCGGTGCTCTCAGCCAGTTGCGTACCTTGGAACTCAGTGACAATGGCCTTACTGGCGAAATTCCAAGTGAAATATGTGCCTTGCTAAATCTCGAACAGCTTTATCTCAATTCGAATCATCTCGAAGGGTCAATACCTGCAGGGATCGGGAATCTCACAAACTTGAAGGAGCTGATTCTCTATGACAATCAGTTAAGCGGTGAAATTCCAATTAGTATAGGAAATTTGAAGCAGCTTGAAGTGATTAGAGCGGGAGGGAACAAGAACTTACTAGGTTCGGTGCCGGAGGAAATTGGTAACTGCAGCAGTTTGGTGATTCTTGGTCTAGCTGAAACAAGCATCTCGGGCTTTCTTCCATCTAGTCTTGGCCAGCTCAAGAAGCTTCAGACATTGGCAATCTATACAGCTCTTCTCTCCGGCGAGATTCCTCGTGAACTTGGCGACTGCACTGAGCTCCAAAACCTCTATCTCTACGAGAACTCGCTCTCCGGCTCGATCCCAAGCACATTAGGTAGTTTACAGAATCTCCAGAGTGTCCTTCTATGGCAGAACGATTTGGTCGGCGTTATACCGCCGGAGCTAGGTAGATGTGACCAGTTATTAGTCATCGACATTTCGATTAATTCCCTGACAGGGAGCATTCCTTCGACGTTTGGGAACTTAACAGCGCTCCAAGAATTGCAACTGAGTACAAATCAATTGTCAGGTGAGATTCCGAAGGAGATCGCAAACTGTCCGAGAATCACTCACATCGAGCTTGATAATAATCAGCTCACTGGTACGATTCCCTCTGAATTGGGAAATCTCACCAATCTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCACCCACAATTTCCAATTGTCGCAATCTCGAGGCCGTGGATTTATCACTGAATGCCTTGACAGGTTCAATTCCGACGGGAATTTTTCAGTTGAAAAAGCTTTCCAAGCTTTTGCTTCTGTCCAACAATCTCTCCGGTGTGATACCGTCGGCAATAGGTAATTGTTCGTCTCTATTTCGGTTCCGAGCGAGCAACAACAAGCTCAATGGGGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCCTGGACCTCGGAAACAATCGCCTCACTGGAGCATTGCCTCCAGAGATTTCTGGATGCCGAAATTTGACATTCATTGATTTGCATTCCAATTCTCTAACGAAATTTCTTCCACAAGAATTGAACCAGCTTTCTTCGCTCCAGTATCTTGATCTCTCAAATAACCTAATTGAAGGGACGCCGAATCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTTGTTCTCTCAAACAACCGCTTCTCGGGGCCTATACCAACTGAAATCGGTTCTTGCTTGAAGCTACAATTACTGGATTTGAGTTGCAATCAGCTATCGGGGAATATTCCTCCGAGCTTAGGCAAGATTCCTTCGCTCGAAATTGGTCTCAATCTGAGCTTAAACCAGCTAACCGGCAAGATTCCACCGGAGTTTGCAAATTTAGACAAGCTCGGGTCATTGGACCTCTCTTACAACCAATTCTCAGGCGACCTCCACATTCTCGCGGACCTGCAAAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGACGCGTACCAGAGACGCCATTTTTCACGCAGCTTCCTCTGAGCGTCCTCTCCGGGAACCCGGACTTGTGCTTCGCCGGCGAAAAATGCTACGCCGATGACCACAGTGGCGGCGCTCGCCACACGCTAGCGGCTCGAGTGGCCATGATTGTATTACTGTGCACGGCGTGCGCACTGCTACTCGCGGCAGTTTATATCATTCTGAAAGATAGACATTCATGTCGAGGATGCTTCAATGGGTCCCGCGGCGAAGATCCAGACACCGCCTTCGACAGCGACCTGGAGCTTGGCTCAGGCTGGGAAGTGACACTATATCAGAAGCTTGATCTCTCAATCTCCGACGTAATCAAATGCTTAACGCCTGCCAATATCATCGGCCGCGGCAAGACCGGCGTCGTGTACAGAGCCTGCATCTCATCGGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCGGACAAGTTCTCAGCGGCGGCGTTTTCATCCGAAATTGCAACATTGGCGAGGATCCGGCACCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAATTGCTGTTCTACGATTACTTGCCGAATGGGAATTTGGGCGCGTTGCTACACGAGGGGAACGGGCGCGTGGGGCTGGACTGGGATAGTAGATTCAAAATAGCGTTGGGAGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCGATATTGCACCGGGACGTGAAGGCTCACAATATTCTGTTGGGGGATCGCTACGAGCCGTGCTTGGCGGACTTTGGGCTCGCCCGCTTGGTCGAAGATGGTCCGAGCGGTTCGTCTTCCGCGAACCCTCAGTTCGCTGGGTCTTACGGCTACTTTGCACCTGAATACGGGTGCATGCTAAGGATCACAGAAAAAAGTGACGTGTACAGCTACGGCGTCGTTTTGCTGGAGATAATAACAGGCAAAAGGCCGGCCGACTCGTCATTTGCAGAGGGCCAGCACGTGATTCAATGGGTGAGAGAGCATTTGAAGAAGAAGAAGGATCCGGTTTCAATCCTGGATCCGAAACTTCAGGGTCAACCCGACCCGCAGATCCAGGAGATTCTGCAGGCATTAGGAATCTCCCTGCTCTGCACCAGCGACCGCGCCGAAGACCGGCCGACGATGAAAGACGTGGCGGCTCTTTTACGGGAGATCCGACAGGACCAGCCGCCGACAGCGGCGGAGGCCGCCGACAAGCCGCCACGAAGCAATAGCAACGCGACAAGCTTGGACACAGCGACGTCGTTTTCGTCGTCCTCTTCGACGGCTCCTGCTAGTCATTTGCAGCTTTTTACGTTGCCCCTTCAGGAATCGTCACGTTGCTCTTATGCTTCGCTGTCCTCGTCGGGCGCGTATTTTCCACGCGATCTTGAGCTAAACCGAGTGGAACTGGGACAGACCGGGACAGTAGAGACCGAATGGAGACGGAAGGAACTCGGCGGGCCGAGCATGGGATTGGGCCGACTTCGGCTTGCTCTCCTCCATGATCTGCTTCCCGGTCAAGCCTTCGTGCTGTGCTTCGTTGTCCTGTTTAGTGATGAGGATAGAACACACGAAAAATCAAATTTAAGATTACTAATGTTTTAA 3612 49.97 MPVNSWTLPSSILILCFSFFYPFILTTSAINEQGQALLTWKLSFNGSNEVLRNWDPSNETPCGWFGITCNKNREVVEVVLRNVNLPGKVPWNFSSLSSLNRLALSGLNLTGSIPKEIGALSQLRTLELSDNGLTGEIPSEICALLNLEQLYLNSNHLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGSVPEEIGNCSSLVILGLAETSISGFLPSSLGQLKKLQTLAIYTALLSGEIPRELGDCTELQNLYLYENSLSGSIPSTLGSLQNLQSVLLWQNDLVGVIPPELGRCDQLLVIDISINSLTGSIPSTFGNLTALQELQLSTNQLSGEIPKEIANCPRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCRNLEAVDLSLNALTGSIPTGIFQLKKLSKLLLLSNNLSGVIPSAIGNCSSLFRFRASNNKLNGEIPPEIGNLKNLIFLDLGNNRLTGALPPEISGCRNLTFIDLHSNSLTKFLPQELNQLSSLQYLDLSNNLIEGTPNPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPPSLGKIPSLEIGLNLSLNQLTGKIPPEFANLDKLGSLDLSYNQFSGDLHILADLQNLVVLNVSHNNFSGRVPETPFFTQLPLSVLSGNPDLCFAGEKCYADDHSGGARHTLAARVAMIVLLCTACALLLAAVYIILKDRHSCRGCFNGSRGEDPDTAFDSDLELGSGWEVTLYQKLDLSISDVIKCLTPANIIGRGKTGVVYRACISSGLIIAVKRFRSSDKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWDSRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEPCLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLEIITGKRPADSSFAEGQHVIQWVREHLKKKKDPVSILDPKLQGQPDPQIQEILQALGISLLCTSDRAEDRPTMKDVAALLREIRQDQPPTAAEAADKPPRSNSNATSLDTATSFSSSSSTAPASHLQLFTLPLQESSRCSYASLSSSGAYFPRDLELNRVELGQTGTVETEWRRKELGGPSMGLGRLRLALLHDLLPGQAFVLCFVVLFSDEDRTHEKSNLRLLMF 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1159624 1166582 + Lag0033693.1 Lac3g0165 600587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0165 1203 Pfam Leucine rich repeat 316 374 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine rich repeat 506 566 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 SUPERFAMILY RNI-like 270 640 - -
Lac3g0165 1203 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 428 522 - -
Lac3g0165 1203 FunFam Leucine-rich repeat receptor protein kinase EMS1 523 607 - -
Lac3g0165 1203 Pfam Protein kinase domain 786 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0165 1203 MobiDBLite consensus disorder prediction 1062 1095 - -
Lac3g0165 1203 SUPERFAMILY L domain-like 32 300 - -
Lac3g0165 1203 Gene3D Ribonuclease Inhibitor 425 694 IPR032675 -
Lac3g0165 1203 MobiDBLite consensus disorder prediction 1074 1095 - -
Lac3g0165 1203 Gene3D Ribonuclease Inhibitor 144 221 IPR032675 -
Lac3g0165 1203 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 858 1074 - -
Lac3g0165 1203 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 30 203 - -
Lac3g0165 1203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac3g0165 1203 Gene3D Transferase(Phosphotransferase) domain 1 858 1082 - -
Lac3g0165 1203 SUPERFAMILY Protein kinase-like (PK-like) 773 1057 IPR011009 -
Lac3g0165 1203 SMART LRR_sd22_2 265 294 - -
Lac3g0165 1203 SMART LRR_sd22_2 481 507 - -
Lac3g0165 1203 SMART LRR_sd22_2 626 651 - -
Lac3g0165 1203 SMART LRR_sd22_2 168 194 - -
Lac3g0165 1203 SMART LRR_sd22_2 120 143 - -
Lac3g0165 1203 SMART LRR_sd22_2 529 547 - -
Lac3g0165 1203 SMART LRR_sd22_2 385 414 - -
Lac3g0165 1203 FunFam Putative LRR receptor-like serine/threonine-protein kinase 608 692 - -
Lac3g0165 1203 SMART LRR_typ_2 289 313 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 337 361 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 529 552 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 410 433 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 481 505 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 168 192 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 553 577 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 649 682 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 120 144 IPR003591 -
Lac3g0165 1203 SMART LRR_typ_2 385 409 IPR003591 -
Lac3g0165 1203 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 483 505 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 651 669 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 579 600 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 387 409 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 Pfam Leucine Rich Repeat 608 626 IPR001611 GO:0005515(InterPro)
Lac3g0165 1203 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524(InterPro)
Lac3g0165 1203 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Lac3g0165 1203 ProSiteProfiles Protein kinase domain profile. 782 1057 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0165 1203 Gene3D Ribonuclease Inhibitor 32 143 IPR032675 -
Lac3g0165 1203 SMART serkin_6 782 1038 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac3g0165 1203 Gene3D Phosphorylase Kinase; domain 1 766 857 - -
Lac3g0165 1203 Gene3D Ribonuclease Inhibitor 222 328 IPR032675 -
Lac3g0165 1203 Gene3D Ribonuclease Inhibitor 329 424 IPR032675 -
Lac3g0165 1203 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 446 1058 IPR051716 -
Lac3g0165 1203 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 204 427 - -
Lac3g0165 1203 ProSiteProfiles Leucine-rich repeat profile. 531 552 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0165 Lac-Chr3:1159624 Lac7g0492 Lac-Chr7:3939142 1.00E-99 dispersed
Lac2g1546 Lac-Chr2:13426534 Lac3g0165 Lac-Chr3:1159624 8.90E-90 transposed
Lac10g0475 Lac-Chr10:3671913 Lac3g0165 Lac-Chr3:1159624 2.00E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86047 PF00069 Pkinase 4.40E-39 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0165 - - - 0.0