Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0194 ATGACCGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGACGACGACCCTATTTGTCTCAAAGTGCTCGAGAATCTCCTCCGTAGATGCCAGTACCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGCGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCGGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAAGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCTACGGCAAAAAACAAGTTCCCTTGTCAAGATAAGGCTCGAAATGGAGGCAGCGAAGGTGAACAAGGTTTCTCATCAACCAGTAATTCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAGGACGAGGAAGGAAAAGAGAATGGACTTGATAACGACGACCCTTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACATACATGCGCATAGGTTCACTTGATGGATACGGAGATTTACATGGCTTTGCAGGACCAGGACGGCTTCCAAACTCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGAGGAATCACCTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGCTCTATTAATAACCTTGGGAAGCTACAGCCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTGTTGCAAGGAATTCCGACATCACTCGAGCTCAGCCAGTTGCAACACAGCAAGTCCACCACTCCAATTGGAGACTTCAATATAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCAGTTTCCACTGCCCCATTGATGTTGCAAGGAACCATGCCAACATTTGGAAATCAGACTTCTCTTAGGGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCAGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAAGGAGCAGCACAATTGTCTAGATTCTCAGCAACTTCTTTGACACCCAATGAAGCTTATCCCAACGATCAGTTGCATGCAATAAATTCGAGCATCTCATCCACCCCCTCAACGATCGGGAACATCCCTGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTGCAGGATTCAAGAGAGATGCAATGCCAGGCAGGTGTAGTTGGCAGTGTTATTCAAACTATGAACACCATGCCAAAGCAGAGTTGGGAAGAGCATAAACACGATTACAGTCGAAACATGCAGCATAATCTTAGCTCAATCAATACTATGGTTCCTAGCAATGGCACTCTAAATCCCTTAAGCCAGAGTTTCAATCAGAATAGTCTAGTATGTGATAGAAAGGTCAGTTCATCTTTGATAGTCCCATCAAATGCTGCTCCTCTATCCTTTGCTCAACATAGTATGGTCGAAAAATTGGGTCCTAACATGAAGACAAATGTGGATGGAAACTACCTTTTGAATCAAACGAAGTCACATGATGGATCGATTCAAGGCAGTTTCGAGTCTTTGGATGATATAATGAATGCGATGATCAAACGGGTATAG 2028 44.08 MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKVLENLLRRCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPTAKNKFPCQDKARNGGSEGEQGFSSTSNSDNAKFNRKRKDQDDDEDEEGKENGLDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRIGSLDGYGDLHGFAGPGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCSINNLGKLQPTTMLPPNQTTNLLQGIPTSLELSQLQHSKSTTPIGDFNIMNETSGFGVPNSFPDSRVNIGNSTNSVSTAPLMLQGTMPTFGNQTSLRVDPLNGETFDIDIGSSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPNDQLHAINSSISSTPSTIGNIPVDFSSRSAVSAPLQDSREMQCQAGVVGSVIQTMNTMPKQSWEEHKHDYSRNMQHNLSSINTMVPSNGTLNPLSQSFNQNSLVCDRKVSSSLIVPSNAAPLSFAQHSMVEKLGPNMKTNVDGNYLLNQTKSHDGSIQGSFESLDDIMNAMIKRV 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1367917 1370746 + Lag0033722.1 Lac3g0194 600616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0194 675 CDD REC_typeB_ARR-like 26 140 - -
Lac3g0194 675 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lac3g0194 675 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Lac3g0194 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Lac3g0194 675 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lac3g0194 675 Gene3D - 24 186 - -
Lac3g0194 675 Gene3D - 207 270 - -
Lac3g0194 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Lac3g0194 675 FunFam Two-component response regulator 207 270 - -
Lac3g0194 675 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Lac3g0194 675 MobiDBLite consensus disorder prediction 151 210 - -
Lac3g0194 675 PIRSF RR_ARR_type-B 481 671 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac3g0194 675 PIRSF RR_ARR_type-B 1 629 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac3g0194 675 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lac3g0194 675 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lac3g0194 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 308 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0194 Lac-Chr3:1367917 Lac7g0922 Lac-Chr7:7732095 4.40E-84 dispersed
Lac2g0557 Lac-Chr2:4210486 Lac3g0194 Lac-Chr3:1367917 1.30E-136 wgd
Lac3g0194 Lac-Chr3:1367917 Lac6g2882 Lac-Chr6:46483755 1.80E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23553 PF00072 Response_reg 1.80E-25 CL0304 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0194 K14491 - csv:101213687 1169.07