Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0194 ATGACCGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGACGACGACCCTATTTGTCTCAAAGTGCTCGAGAATCTCCTCCGTAGATGCCAGTACCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGCGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCGGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAAGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCTACGGCAAAAAACAAGTTCCCTTGTCAAGATAAGGCTCGAAATGGAGGCAGCGAAGGTGAACAAGGTTTCTCATCAACCAGTAATTCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAGGACGAGGAAGGAAAAGAGAATGGACTTGATAACGACGACCCTTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACATACATGCGCATAGGTTCACTTGATGGATACGGAGATTTACATGGCTTTGCAGGACCAGGACGGCTTCCAAACTCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGAGGAATCACCTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGCTCTATTAATAACCTTGGGAAGCTACAGCCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTGTTGCAAGGAATTCCGACATCACTCGAGCTCAGCCAGTTGCAACACAGCAAGTCCACCACTCCAATTGGAGACTTCAATATAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCAGTTTCCACTGCCCCATTGATGTTGCAAGGAACCATGCCAACATTTGGAAATCAGACTTCTCTTAGGGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCAGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAAGGAGCAGCACAATTGTCTAGATTCTCAGCAACTTCTTTGACACCCAATGAAGCTTATCCCAACGATCAGTTGCATGCAATAAATTCGAGCATCTCATCCACCCCCTCAACGATCGGGAACATCCCTGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTGCAGGATTCAAGAGAGATGCAATGCCAGGCAGGTGTAGTTGGCAGTGTTATTCAAACTATGAACACCATGCCAAAGCAGAGTTGGGAAGAGCATAAACACGATTACAGTCGAAACATGCAGCATAATCTTAGCTCAATCAATACTATGGTTCCTAGCAATGGCACTCTAAATCCCTTAAGCCAGAGTTTCAATCAGAATAGTCTAGTATGTGATAGAAAGGTCAGTTCATCTTTGATAGTCCCATCAAATGCTGCTCCTCTATCCTTTGCTCAACATAGTATGGTCGAAAAATTGGGTCCTAACATGAAGACAAATGTGGATGGAAACTACCTTTTGAATCAAACGAAGTCACATGATGGATCGATTCAAGGCAGTTTCGAGTCTTTGGATGATATAATGAATGCGATGATCAAACGGGTATAG 2028 44.08 MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKVLENLLRRCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPTAKNKFPCQDKARNGGSEGEQGFSSTSNSDNAKFNRKRKDQDDDEDEEGKENGLDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRIGSLDGYGDLHGFAGPGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCSINNLGKLQPTTMLPPNQTTNLLQGIPTSLELSQLQHSKSTTPIGDFNIMNETSGFGVPNSFPDSRVNIGNSTNSVSTAPLMLQGTMPTFGNQTSLRVDPLNGETFDIDIGSSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPNDQLHAINSSISSTPSTIGNIPVDFSSRSAVSAPLQDSREMQCQAGVVGSVIQTMNTMPKQSWEEHKHDYSRNMQHNLSSINTMVPSNGTLNPLSQSFNQNSLVCDRKVSSSLIVPSNAAPLSFAQHSMVEKLGPNMKTNVDGNYLLNQTKSHDGSIQGSFESLDDIMNAMIKRV 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1367917 1370746 + Lag0033722.1 Lac3g0194 600616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0194 675 CDD REC_typeB_ARR-like 26 140 - -
Lac3g0194 675 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lac3g0194 675 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Lac3g0194 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Lac3g0194 675 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lac3g0194 675 Gene3D - 24 186 - -
Lac3g0194 675 Gene3D - 207 270 - -
Lac3g0194 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Lac3g0194 675 FunFam Two-component response regulator 207 270 - -
Lac3g0194 675 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Lac3g0194 675 MobiDBLite consensus disorder prediction 151 210 - -
Lac3g0194 675 PIRSF RR_ARR_type-B 481 671 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac3g0194 675 PIRSF RR_ARR_type-B 1 629 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac3g0194 675 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lac3g0194 675 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lac3g0194 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 308 IPR045279 GO:0009736(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0194 K14491 - - csv:101213687 1169.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0194 Lac-Chr3:1367917 Lac7g0922 Lac-Chr7:7732095 4.40E-84 dispersed
Lac2g0557 Lac-Chr2:4210486 Lac3g0194 Lac-Chr3:1367917 1.30E-136 wgd
Lac3g0194 Lac-Chr3:1367917 Lac6g2882 Lac-Chr6:46483755 1.80E-162 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0714 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.6e-53 208.4
Lac3g0194 . 18 386 Response Regulator Gene Family AT4G31920 54.8 1.7e-89 327.8
Lac6g2882 . 17 337 Response Regulator Gene Family AT4G31920 52.7 4.8e-81 299.7
Lac11g0905 . 25 289 Response Regulator Gene Family AT4G31920 52.9 2.0e-71 267.7
Lac7g0922 . 16 270 Response Regulator Gene Family AT4G31920 53.9 2.1e-68 257.7
Lac6g0714 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.6e-62 235.7
Lac2g0557 . 93 256 Response Regulator Gene Family AT1G67710 53.5 1.2e-40 165.2
Lac7g0922 . 99 261 Response Regulator Gene Family AT1G67710 53.8 9.8e-40 162.2
Lac6g2882 . 17 380 Response Regulator Gene Family AT2G25180 52.8 1.2e-85 315.1
Lac7g0922 . 18 290 Response Regulator Gene Family AT2G25180 54.7 6.0e-77 286.2
Lac6g0714 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.9e-68 256.9
Lac7g0922 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.2e-53 206.5
Lac3g0194 . 79 303 Response Regulator Gene Family AT2G01760 53.9 1.8e-48 190.7
Lac6g0714 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.3e-46 184.5
Lac6g0714 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.6e-62 237.7
Lac7g0922 . 17 241 Response Regulator Gene Family AT4G16110 67.5 4.9e-80 296.6
Lac11g0905 . 26 251 Response Regulator Gene Family AT4G16110 66.7 2.4e-79 294.3
Lac2g0557 . 11 234 Response Regulator Gene Family AT4G16110 57.8 3.2e-63 240.7
Lac6g0714 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.4e-58 225.3
Lac3g0194 . 17 249 Response Regulator Gene Family AT4G16110 54.1 1.0e-56 219.2
Lac6g2882 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.5e-52 205.3
Lac3g0664 . 20 174 Response Regulator Gene Family AT3G48100 71.3 1.9e-53 206.5
Lac13g0242 . 29 162 Response Regulator Gene Family AT3G48100 70.1 2.1e-49 193.0
Lac1g1457 . 10 156 Response Regulator Gene Family AT3G48100 57.1 1.8e-40 163.3
Lac10g2145 . 3 153 Response Regulator Gene Family AT3G48100 55.0 5.3e-40 161.8
Lac13g0750 . 4 165 Response Regulator Gene Family AT3G48100 53.7 1.3e-38 157.1
Lac8g2104 . 11 157 Response Regulator Gene Family AT3G48100 56.5 1.3e-38 157.1
Lac8g1837 . 18 163 Response Regulator Gene Family AT3G48100 56.5 3.8e-38 155.6
Lac13g0242 . 1 201 Response Regulator Gene Family AT1G59940 61.0 9.2e-56 214.9
Lac3g0664 . 22 174 Response Regulator Gene Family AT1G59940 64.1 8.3e-49 191.8
Lac8g2104 . 5 158 Response Regulator Gene Family AT1G59940 57.1 1.4e-40 164.5
Lac10g2145 . 8 151 Response Regulator Gene Family AT1G59940 59.0 5.4e-40 162.5
Lac13g0750 . 9 163 Response Regulator Gene Family AT1G59940 57.4 9.2e-40 161.8
Lac1g1457 . 11 154 Response Regulator Gene Family AT1G59940 56.3 2.7e-39 160.2
Lac13g1253 . 18 149 Response Regulator Gene Family AT1G59940 62.1 1.7e-38 157.5
Lac8g1837 . 2 168 Response Regulator Gene Family AT1G59940 52.4 3.0e-38 156.8
Lac13g0242 . 16 185 Response Regulator Gene Family AT1G10470 65.3 1.6e-52 203.8
Lac3g0664 . 30 160 Response Regulator Gene Family AT1G10470 73.3 1.4e-48 190.7
Lac10g2145 . 10 151 Response Regulator Gene Family AT1G10470 59.2 7.0e-40 161.8
Lac1g1457 . 17 154 Response Regulator Gene Family AT1G10470 60.9 2.7e-39 159.8
Lac8g2104 . 5 163 Response Regulator Gene Family AT1G10470 54.1 2.7e-39 159.8
Lac8g1837 . 18 177 Response Regulator Gene Family AT1G10470 51.6 8.6e-38 154.8
Lac13g0750 . 11 146 Response Regulator Gene Family AT1G10470 60.3 1.9e-37 153.7
Lac13g1253 . 20 149 Response Regulator Gene Family AT1G10470 61.5 2.5e-37 153.3
Lac3g0664 . 20 174 Response Regulator Gene Family AT3G48100 71.3 1.9e-53 206.5
Lac13g0242 . 29 162 Response Regulator Gene Family AT3G48100 70.1 2.1e-49 193.0
Lac1g1457 . 10 156 Response Regulator Gene Family AT3G48100 57.1 1.8e-40 163.3
Lac10g2145 . 3 153 Response Regulator Gene Family AT3G48100 55.0 5.3e-40 161.8
Lac13g0750 . 4 165 Response Regulator Gene Family AT3G48100 53.7 1.3e-38 157.1
Lac8g2104 . 11 157 Response Regulator Gene Family AT3G48100 56.5 1.3e-38 157.1
Lac8g1837 . 18 163 Response Regulator Gene Family AT3G48100 56.5 3.8e-38 155.6
Lac3g0664 . 19 163 Response Regulator Gene Family AT5G62920 72.4 6.1e-52 201.4
Lac13g0242 . 11 175 Response Regulator Gene Family AT5G62920 61.8 5.3e-48 188.3
Lac1g1457 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.4e-40 162.9
Lac10g2145 . 10 153 Response Regulator Gene Family AT5G62920 56.3 2.6e-39 159.5
Lac8g2104 . 11 157 Response Regulator Gene Family AT5G62920 58.1 2.6e-39 159.5
Lac8g1837 . 18 158 Response Regulator Gene Family AT5G62920 57.7 5.5e-37 151.8
Lac13g0750 . 11 146 Response Regulator Gene Family AT5G62920 58.8 7.2e-37 151.4
Lac3g0664 . 30 179 Response Regulator Gene Family AT1G19050 71.9 5.1e-52 201.8
Lac13g0242 . 28 185 Response Regulator Gene Family AT1G19050 57.9 3.3e-43 172.6
Lac10g2145 . 8 153 Response Regulator Gene Family AT1G19050 55.5 5.0e-39 158.7
Lac1g1457 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.5e-39 158.3
Lac8g2104 . 3 160 Response Regulator Gene Family AT1G19050 53.2 5.5e-38 155.2
Lac13g0750 . 9 156 Response Regulator Gene Family AT1G19050 54.7 9.4e-38 154.5
Lac13g1253 . 20 150 Response Regulator Gene Family AT1G19050 59.5 1.8e-36 150.2
Lac1g1457 . 8 268 Response Regulator Gene Family AT2G41310 51.8 1.6e-59 226.9
Lac10g2145 . 1 155 Response Regulator Gene Family AT2G41310 75.5 4.7e-59 225.3
Lac13g0750 . 3 182 Response Regulator Gene Family AT2G41310 51.1 9.9e-49 191.0
Lac8g2104 . 8 159 Response Regulator Gene Family AT2G41310 62.5 7.1e-47 184.9
Lac8g1837 . 10 166 Response Regulator Gene Family AT2G41310 59.1 1.5e-44 177.2
Lac13g0242 . 25 158 Response Regulator Gene Family AT2G41310 59.6 3.4e-41 166.0
Lac3g0664 . 30 160 Response Regulator Gene Family AT2G41310 61.9 1.1e-39 161.0
Lac13g1253 . 20 150 Response Regulator Gene Family AT2G41310 57.4 1.9e-39 160.2
Lac2g0939 . 15 163 Response Regulator Gene Family AT2G41310 50.7 3.5e-38 156.0
Lac1g1457 . 8 268 Response Regulator Gene Family AT3G57040 52.8 1.6e-62 236.9
Lac10g2145 . 1 156 Response Regulator Gene Family AT3G57040 78.2 5.3e-61 231.9
Lac13g0750 . 4 155 Response Regulator Gene Family AT3G57040 66.9 7.1e-50 194.9
Lac8g2104 . 1 159 Response Regulator Gene Family AT3G57040 64.8 6.0e-49 191.8
Lac8g1837 . 14 159 Response Regulator Gene Family AT3G57040 62.6 3.1e-45 179.5
Lac13g0242 . 25 158 Response Regulator Gene Family AT3G57040 60.1 3.8e-43 172.6
Lac3g0664 . 26 168 Response Regulator Gene Family AT3G57040 57.5 1.6e-41 167.2
Lac2g0939 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.5e-41 166.0
Lac13g1253 . 18 150 Response Regulator Gene Family AT3G57040 55.7 4.3e-39 159.1
Lac3g0664 . 16 182 Response Regulator Gene Family AT1G74890 67.8 5.5e-54 208.4
Lac13g0242 . 25 187 Response Regulator Gene Family AT1G74890 59.4 1.2e-45 180.6
Lac1g1457 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.7e-39 160.2
Lac10g2145 . 8 151 Response Regulator Gene Family AT1G74890 55.6 6.5e-39 158.3
Lac13g0750 . 5 167 Response Regulator Gene Family AT1G74890 54.3 6.5e-39 158.3
Lac8g2104 . 9 152 Response Regulator Gene Family AT1G74890 55.6 3.2e-38 156.0
Lac13g1253 . 20 146 Response Regulator Gene Family AT1G74890 59.1 1.8e-36 150.2
Lac13g1253 . 20 151 Response Regulator Gene Family AT2G40670 69.2 6.8e-47 184.5
Lac10g2145 . 6 153 Response Regulator Gene Family AT2G40670 55.7 8.1e-40 161.0
Lac13g0242 . 26 159 Response Regulator Gene Family AT2G40670 52.6 7.5e-38 154.5
Lac3g0664 . 30 155 Response Regulator Gene Family AT2G40670 62.3 7.5e-38 154.5
Lac1g1457 . 13 156 Response Regulator Gene Family AT2G40670 51.7 8.3e-37 151.0
Lac13g1253 . 3 151 Response Regulator Gene Family AT3G56380 67.3 1.2e-48 190.3
Lac3g0664 . 20 160 Response Regulator Gene Family AT3G56380 60.1 1.2e-40 163.7
Lac10g2145 . 6 153 Response Regulator Gene Family AT3G56380 53.9 8.3e-39 157.5
Lac13g0242 . 26 159 Response Regulator Gene Family AT3G56380 51.9 1.4e-38 156.8
Lac8g1837 . 10 156 Response Regulator Gene Family AT3G56380 53.7 9.2e-38 154.1
Lac1g1457 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.5e-37 152.1
Lac13g0750 . 3 146 Response Regulator Gene Family AT3G56380 54.5 4.6e-37 151.8
Lac6g0714 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.6e-53 208.4
Lac7g0922 . 17 241 Response Regulator Gene Family AT4G16110 67.5 4.9e-80 296.6
Lac11g0905 . 26 251 Response Regulator Gene Family AT4G16110 66.7 2.4e-79 294.3
Lac2g0557 . 11 234 Response Regulator Gene Family AT4G16110 57.8 3.2e-63 240.7
Lac6g0714 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.4e-58 225.3
Lac3g0194 . 17 249 Response Regulator Gene Family AT4G16110 54.1 1.0e-56 219.2
Lac6g2882 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.5e-52 205.3
Lac3g0194 . 18 386 Response Regulator Gene Family AT4G31920 54.8 1.7e-89 327.8
Lac6g2882 . 17 337 Response Regulator Gene Family AT4G31920 52.7 4.8e-81 299.7
Lac11g0905 . 25 289 Response Regulator Gene Family AT4G31920 52.9 2.0e-71 267.7
Lac7g0922 . 16 270 Response Regulator Gene Family AT4G31920 53.9 2.1e-68 257.7
Lac6g0714 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.6e-62 235.7
Lac2g0557 . 93 256 Response Regulator Gene Family AT1G67710 53.5 1.2e-40 165.2
Lac7g0922 . 99 261 Response Regulator Gene Family AT1G67710 53.8 9.8e-40 162.2
Lac6g2882 . 17 380 Response Regulator Gene Family AT2G25180 52.8 1.2e-85 315.1
Lac7g0922 . 18 290 Response Regulator Gene Family AT2G25180 54.7 6.0e-77 286.2
Lac6g0714 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.9e-68 256.9
Lac7g0922 . 79 308 Response Regulator Gene Family AT2G01760 50.4 3.2e-53 206.5
Lac3g0194 . 79 303 Response Regulator Gene Family AT2G01760 53.9 1.8e-48 190.7
Lac6g0714 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.3e-46 184.5
Lac6g0714 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.6e-62 237.7
Lac1g2096 . 68 214 Response Regulator Gene Family AT5G60100 78.9 2.7e-60 230.3
Lac4g0028 . 58 195 Response Regulator Gene Family AT5G60100 61.6 3.2e-45 180.3
Lac7g0011 . 53 187 Response Regulator Gene Family AT5G60100 60.0 2.4e-40 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003972 2 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23553 PF00072 Response_reg 1.80E-25 CL0304 Lac TF