Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac3g0200 | ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTAAACTCTCTCTTAAACCACTCCCAAATCTCCCTCCAGGATCTCCACGCCGATACCCACCACCACCACCTGAATCCGCCCCCGCCGCCGTCGCAGCAGATCCCGCCGTCTCAGCTCCACCATTTCGATCCGGCCGTCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAATACAATCCCTTCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTCAACCCCATCAATAAGCCGCACAGAGATATCTCCGATGACCCCCACCAGAACCAGATCAACGCCACCTCTCCCGCCGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGTCCAGAGGCATCTCCTCCGCCGCCGGAAATGGCGTCGCTGACCATGGCCTCCCCCCCATGCCTCTCTCCCTCGGAAATGCCGACTTGGACCGCTCCCAAAACGACGTCGTCGACGGATCCTGCTTCCGGCCACCAAACTCTGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGGAAACGTGATGAATCAAGCTCCGGCCAGTGGGTCCGCCGGGGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACCGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAGTTTCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCTGTTGCTCCTCTCGTTGCTGACGTGTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGAAGTGGAGCACAAGGTGGCCGGAGTTCGAACGGCGGCGGCGGAAACCAAACGGCGTCGTCGAACGAAAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAGGGGAAAGGACTGTGTCTTATGCCGATCTCGCTGGCGACGGCGATTTCGACGTCCACGTGTCACTCGAGGAATCCGATGATGAACGGCGGCGGTGGTGGACATCCGGTGATGGGATCGAACGGAGAAGGGCCGTCGTCGCCGAGCATGTCGGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTGAAGGACGCCGCCTCCGTATCGAAGCCGTGA | 1266 | 58.53 | MQPCSREMQTLNSLLNHSQISLQDLHADTHHHHLNPPPPPSQQIPPSQLHHFDPAVASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPHRDISDDPHQNQINATSPAAKAAVMLQQQLLLSRGISSAAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPGNVMNQAPASGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRSSNGGGGNQTASSNESMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMMNGGGGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1412872 | 1415577 | + | Lag0033728.1 | Lac3g0200 | 600622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac3g0200 | 421 | SMART | finulus | 222 | 271 | IPR011598 | GO:0046983(InterPro) | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 303 | 328 | - | - | |
Lac3g0200 | 421 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 214 | 276 | IPR036638 | GO:0046983(InterPro) | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 292 | 328 | - | - | |
Lac3g0200 | 421 | FunFam | Transcription factor bHLH66 | 213 | 278 | - | - | |
Lac3g0200 | 421 | Gene3D | - | 211 | 273 | IPR036638 | GO:0046983(InterPro) | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 371 | 421 | - | - | |
Lac3g0200 | 421 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 216 | 265 | IPR011598 | GO:0046983(InterPro) | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 389 | 421 | - | - | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 166 | 219 | - | - | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 29 | 48 | - | - | |
Lac3g0200 | 421 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 57 | 362 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Lac3g0200 | 421 | MobiDBLite | consensus disorder prediction | 172 | 211 | - | - | |
Lac3g0200 | 421 | Pfam | Helix-loop-helix DNA-binding domain | 221 | 266 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g0200 | Lac-Chr3:1412872 | Lac4g2224 | Lac-Chr4:41900211 | 2.80E-49 | dispersed | |
Lac11g2712 | Lac-Chr11:42948275 | Lac3g0200 | Lac-Chr3:1412872 | 3.00E-19 | transposed | |
Lac6g2849 | Lac-Chr6:46113787 | Lac3g0200 | Lac-Chr3:1412872 | 5.50E-74 | transposed | |
Lac8g2740 | Lac-Chr8:44797544 | Lac3g0200 | Lac-Chr3:1412872 | 2.60E-77 | transposed | |
Lac3g0200 | Lac-Chr3:1412872 | Lac6g2493 | Lac-Chr6:42737424 | 1.00E-14 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23554 | PF00010 | HLH | 1.60E-09 | No_clan | Lac | TF |
Pathway information
