Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac3g0200 ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTAAACTCTCTCTTAAACCACTCCCAAATCTCCCTCCAGGATCTCCACGCCGATACCCACCACCACCACCTGAATCCGCCCCCGCCGCCGTCGCAGCAGATCCCGCCGTCTCAGCTCCACCATTTCGATCCGGCCGTCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAATACAATCCCTTCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTCAACCCCATCAATAAGCCGCACAGAGATATCTCCGATGACCCCCACCAGAACCAGATCAACGCCACCTCTCCCGCCGCCAAGGCCGCCGTCATGCTCCAGCAACAGCTTCTCTTGTCCAGAGGCATCTCCTCCGCCGCCGGAAATGGCGTCGCTGACCATGGCCTCCCCCCCATGCCTCTCTCCCTCGGAAATGCCGACTTGGACCGCTCCCAAAACGACGTCGTCGACGGATCCTGCTTCCGGCCACCAAACTCTGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGGAAACGTGATGAATCAAGCTCCGGCCAGTGGGTCCGCCGGGGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACCGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGATAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAGTTTCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCTGTTGCTCCTCTCGTTGCTGACGTGTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGAAGTGGAGCACAAGGTGGCCGGAGTTCGAACGGCGGCGGCGGAAACCAAACGGCGTCGTCGAACGAAAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAGGGGAAAGGACTGTGTCTTATGCCGATCTCGCTGGCGACGGCGATTTCGACGTCCACGTGTCACTCGAGGAATCCGATGATGAACGGCGGCGGTGGTGGACATCCGGTGATGGGATCGAACGGAGAAGGGCCGTCGTCGCCGAGCATGTCGGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTGAAGGACGCCGCCTCCGTATCGAAGCCGTGA 1266 58.53 MQPCSREMQTLNSLLNHSQISLQDLHADTHHHHLNPPPPPSQQIPPSQLHHFDPAVASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPHRDISDDPHQNQINATSPAAKAAVMLQQQLLLSRGISSAAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPGNVMNQAPASGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRSSNGGGGNQTASSNESMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMMNGGGGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1412872 1415577 + Lag0033728.1 Lac3g0200 600622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac3g0200 421 SMART finulus 222 271 IPR011598 GO:0046983(InterPro)
Lac3g0200 421 MobiDBLite consensus disorder prediction 303 328 - -
Lac3g0200 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 276 IPR036638 GO:0046983(InterPro)
Lac3g0200 421 MobiDBLite consensus disorder prediction 292 328 - -
Lac3g0200 421 FunFam Transcription factor bHLH66 213 278 - -
Lac3g0200 421 Gene3D - 211 273 IPR036638 GO:0046983(InterPro)
Lac3g0200 421 MobiDBLite consensus disorder prediction 371 421 - -
Lac3g0200 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983(InterPro)
Lac3g0200 421 MobiDBLite consensus disorder prediction 389 421 - -
Lac3g0200 421 MobiDBLite consensus disorder prediction 166 219 - -
Lac3g0200 421 MobiDBLite consensus disorder prediction 29 48 - -
Lac3g0200 421 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 362 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac3g0200 421 MobiDBLite consensus disorder prediction 172 211 - -
Lac3g0200 421 Pfam Helix-loop-helix DNA-binding domain 221 266 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0200 Lac-Chr3:1412872 Lac4g2224 Lac-Chr4:41900211 2.80E-49 dispersed
Lac11g2712 Lac-Chr11:42948275 Lac3g0200 Lac-Chr3:1412872 3.00E-19 transposed
Lac6g2849 Lac-Chr6:46113787 Lac3g0200 Lac-Chr3:1412872 5.50E-74 transposed
Lac8g2740 Lac-Chr8:44797544 Lac3g0200 Lac-Chr3:1412872 2.60E-77 transposed
Lac3g0200 Lac-Chr3:1412872 Lac6g2493 Lac-Chr6:42737424 1.00E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23554 PF00010 HLH 1.60E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac3g0200 - - - 0.0